KEGG   Cynara cardunculus var. scolymus (artichoke): 112499802
Entry
112499802         CDS       T05604                                 
Name
(RefSeq) serine/arginine-rich splicing factor SR45
  KO
K14325  RNA-binding protein with serine-rich domain 1
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03013  Nucleocytoplasmic transport
ccav03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    112499802
   03015 mRNA surveillance pathway
    112499802
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccav03019]
    112499802
Messenger RNA biogenesis [BR:ccav03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     112499802
SSDB
Motif
Pfam: RRM_1 RRM_occluded RRM_ACIN1 YHR127W_C RRM_5 RRM_3 RRM_10
Other DBs
NCBI-GeneID: 112499802
NCBI-ProteinID: XP_024958836
LinkDB
Position
LG 17
AA seq 422 aa
MAKPGRGRPAAPSGSGSGSSSRSRSISRSSRSSSRSRSRSRSYSSSSSPSRSVSSRSRSP
PPKKSSVDGPKRGRSPPPQSKRASPPPRKASPVPESLVLHIGQLTRNVNENHLKEIFGNF
GEVVHVRLAMDHVVNLPKGSGYVEFKARTDAEKAQLHMDGAQIDGKVVQAKFTLPERKKV
SPPPKPLATGSRRDAARNDNVGVDAEKDGPRRPPPASPRRRPPSPSRRRSPVARRGSPRR
DLNSPPRRRVDSPPARRRPESPPYRRGGSPPPRRRPASPPARGRSPSPPGRRYNRSPLRT
SPRRVRASPIRRRSPPPRRRSSGRARSPPPRRSPISRRRSRSPIRRPGRSRSKSISPRRV
RPPVGRRGRSSSYSDSPSPRKVTRKVSRSRSPKRGVRRRSSSSNSSSSSSLPPPPPPPPR
RP
NT seq 1269 nt   +upstreamnt  +downstreamnt
atggcgaaacccggccgtggacgtccggcggcaccctcggggtctggttctggctcatcc
tcccgttctcgctccatctctcgctcctctcgctcaagctcccgttccagatctcgctcc
agatcctactcttcttcttcgtctccgtctcgcagtgtcagctctcgcagccgtagtccc
cctcccaagaaaagttctgttgatggaccaaaacgaggtcgctctccaccacctcaatct
aagagggcttcgccacctccaaggaaagcctctcctgtacctgagtcgcttgttcttcac
attggacagctcacaaggaacgtgaatgaaaaccatctgaaagaaatatttggaaatttt
ggtgaagtagtacatgtgcgattggctatggatcatgtggttaaccttccaaaaggatct
ggatatgttgagttcaaggcacgaactgatgctgaaaaggcccaattacatatggatggt
gcccagattgatgggaaggttgtgcaagccaagtttactttacccgagaggaagaaggtt
tcaccacctcccaagcctttggccactggttcaaggagagatgcagccagaaacgataat
gtaggtgttgatgccgaaaaagatggaccaaggcgcccaccacctgcttctcctcgacgt
agacctccctcaccatcacgccggaggtctcctgtagcccgaagaggatctcctaggaga
gatctgaattctcctccccgtcggcgagtagactcccctcctgctcgacgaagaccagaa
tctcctccttatcgtcggggtggttcaccgcctcctagaagaaggcctgcttcacctcct
gctagaggccgctcaccttctcctccaggaagacgttataatagatcaccccttaggacc
tctcctcgccgggtgcgtgctagtccaattcgaaggcgttcacccccaccaaggcgccgt
tcttctggacgagcaaggagtcctccacccagaagatctcctataagtcgcaggcgtagc
cgctcgcctatcagaaggcctggtcgttcacgttctaaatcaatctcaccgagaagggta
cgaccacctgttgggaggcgtggcagatcgtcatcttattcggattctccaagtccacga
aaggtgacgaggaaggtatcaagaagtcgcagtcctaaaaggggtgtaagacgaagaagc
agcagcagcaatagcagcagcagcagttcacttccaccaccacctccaccacctcctcgt
aggccatag

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