Cynara cardunculus var. scolymus (artichoke): 112500145
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Entry
112500145 CDS
T05604
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
KO
K10752
histone-binding protein RBBP4
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03082
ATP-dependent chromatin remodeling
ccav03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112500145
03083 Polycomb repressive complex
112500145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccav03036
]
112500145
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
112500145
Histone modification proteins
HAT complexes
HATB complex
112500145
HDAC complexes
Sin3A-HDAC complex
112500145
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
112500145
PRC2.2
112500145
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
112500145
Heterochromatin formation proteins
Other heterochromatin formation proteins
112500145
Chromatin remodeling factors
NuRD complex
112500145
NuRF complex
112500145
NuRF complex (fruit fly)
112500145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
CAF1C_H4-bd
WD40_Prp19
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML
EIF3I
WD40_RFWD3
WD40_MABP1-WDR62_2nd
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_WDR90_POC16_2nd
eIF2A
ANAPC4_WD40
Beta-prop_NUP159_NUP214
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
112500145
NCBI-ProteinID:
XP_024959239
LinkDB
All DBs
Position
LG 17:37363276..37374516
Genome browser
AA seq
494 aa
AA seq
DB search
MEEASSPLSQPKKRGRPKGSKKITREEREISGLKMRDRASAVGNKKAAVVDEKYNNWKSV
VPILYDWLANHNLVWPSLSCRWGPLLEQSKNKNKQRLYLSEQTDGSVPNTLVIANCDVVK
PKVAAAEHISQFNEEARSPFVKKFRTIIHPGEVNRIRELPQNKNIVATHTDCPEVLIWDI
EAQPNRYAVLGAAESHADLVLTGHSDNAEFALAMCPSEPYVLSGGKDKYVVLWSIHDHIS
TLGGGDSTNTSGSTGSIVKSVNNASLGPRGIFQGHEDTVEDVQFCPTSTQEFCSVGDDSC
LILWDARVGTDPVMKVEKAHNADVHCVDWSPHDENYILTGSADHSVCMFDRRNLTSDGVA
SPVHKFEEHRAPVLCVQWCPDKRSVFGSSAEDSCVNIWDYEQVGKKTEHGTKSPNSAPGL
FFKHCGHRDKVVDFHWNVYDPWTVVSVSDDVETTSGGGTLQIWRMSDLIYRPRDEVLTEL
EDFKAHVATCGPRA
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagcttcatcaccattgtcgcagcctaaaaagagaggtaggcccaagggctcc
aagaagatcaccagggaagaacgagagatttcaggtctcaagatgagagacagagcttcc
gctgtcggaaacaagaaagcggccgtcgtcgacgagaagtacaataactggaagtccgtc
gtccccattctttatgattggcttgctaaccataacctcgtttggccctctctctcttgc
cgatggggaccattgctggaacaatcgaagaacaagaataagcagcgtctgtatctttcg
gaacagactgacggtagtgttccaaatacactagtaatagcaaattgtgacgtagtgaag
ccaaaagttgctgcagcagaacacatatctcagttcaacgaggaagctcgttctcccttt
gtaaagaagttcagaactatcattcatcctggagaggtgaacagaattagggaactgcca
caaaacaagaacatagttgctacacatacagactgcccagaggtcctcatttgggatatt
gaagcacagcctaatcgttacgctgttcttggagctgctgaatctcatgctgatttggtg
cttacaggacattcggataatgcagaatttgcccttgcaatgtgcccatctgaaccttat
gtactctctggaggaaaggataaatatgtggttttgtggagtattcatgaccatatatca
acactgggtggaggagactcaaccaacacttcaggatctacagggtcaattgttaaaagt
gttaataatgcttctctggggcctcgtgggatctttcaagggcatgaggatacggttgaa
gatgtgcagttctgtccaacaagtacacaggaattctgtagcgttggagatgattcttgc
ctgatactgtgggatgcaagagttggaaccgacccggtcatgaaggtcgaaaaggcacat
aatgctgacgttcactgcgttgattggagtcctcatgatgagaactatattctcaccggg
tcagctgatcactctgtttgcatgtttgaccgccgaaatctaacttctgatggagtcgcc
tctcctgttcataaatttgaagaacacagagctcctgttctttgtgtccagtggtgtcca
gacaagcgttctgtcttcgggagttcagcagaggatagctgtgtaaatatctgggattat
gaacaggttggtaaaaagacagaacacgggacaaaatctccaaactctgctccggggttg
ttcttcaaacattgtgggcacagggacaaagtggtagacttccattggaatgtgtatgat
ccatggactgttgttagtgtatctgatgatgttgaaacaacaagtggtggtggtaccctt
cagatttggcgaatgagcgatttgatataccgacccagggatgaagtgttgacggaatta
gaggacttcaaggctcatgttgctacatgtggtccacgggcatag
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integrated database retrieval system
