Cynara cardunculus var. scolymus (artichoke): 112500199
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Entry
112500199 CDS
T05604
Name
(RefSeq) F-box/LRR-repeat protein 2 isoform X1
KO
K15082
DNA repair protein RAD7
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112500199
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
112500199
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LRR_6
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
112500199
NCBI-ProteinID:
XP_024959330
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Position
LG 17:31294070..31317507
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AA seq
713 aa
AA seq
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MFFSIYLFIQRFCDLGVELELGSAYQESIITPFRVLVGIFRMESDQNLGFGEVSDVSGSK
RVSEGSSGNSDTVNKKPRVTEKLDDDQEGKKEKEPVLKLESDLHVSIMKEEIGFGECNQI
GLEFDLNGPPVREVIDISSDDEKVDEMLGKESTIDLDLRLGINDGNGGSSERRSYSREEK
GKAKVDDLLSLSLPSEIPQGDVNPNMELNYIPFRLLAAVTWQYHAEKLKRERALRIKRVR
NYELQFSRKDDSWNIKLENLTGSFSAELKAIIDRNTTQRAEQLIEWSAHSSHYRPRPAPS
LLDLSLNVLAKNPDAVSSFEDVPDWLKRRIVNLLCDVHTMDIRILELLFEGSPTEIRVKN
CSWMTEKQLVDMLKKSDLQNLRVLQLDSCGQCSFDDIICNSLALPPNSLACLGILSLRAA
ARLSDNTLRRLLVSAPLLQSINLGQCSLLTCDGIKILADSLKTNLKELYIDQCPRIDAMH
SLSSMMQFEHLEVISVAEIPTVSDKFVMCITRACGRTLKELNLAGCVMLTDGSLQAIGHF
CSDLCSLNISNLNYVTDLGLCYLADGCRSLESLNIARAGFSDVVVAAFLETSGGSLKELS
LNHVRKVSFNSAFALAKFSRKLVSLDLSWCRQVTDEALGFITDNCSSLKLLKIFGCTQIT
DTFVLGRANSQVHVVGRDSVSVLDHVKMFEPVEVLLHYSPLETPAALAHNDGM
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgttcttttcaatttatttgtttattcagcgcttctgtgatctgggggttgagttggaa
cttggaagtgcttatcaagaatctatcataactcctttcagggttttggttggaattttt
cggatggagtctgatcaaaatctagggtttggggaagtttctgatgtgagtggaagcaag
agggtttctgaaggaagcagtgggaattcagatactgtgaacaagaaacctcgggttacc
gagaagcttgatgatgatcaggagggtaagaaggaaaaagaaccggtactgaaactggag
agtgatcttcatgtctcgatcatgaaggaggagattggttttggagaatgtaaccaaatc
ggacttgagtttgatcttaatggcccgccagtcagggaggttattgacatctcgtccgat
gatgagaaggtggatgaaatgttaggcaaagaatctactatagatcttgatcttcggctg
ggaataaatgatggcaatggtggtagttcggagaggagatcatactcgagagaagaaaaa
ggaaaggcaaaagttgatgacctgttatcattgtctcttccaagtgaaattccacaaggg
gatgtgaaccccaatatggaattgaattatattccattcagattactggctgcagtaact
tggcaatatcatgcagaaaaactaaaaagggaaagagcattaagaataaaaagagttcgt
aattatgaactacagttcagtcgtaaagatgattcttggaatatcaagttagaaaactta
actggctcattttctgctgaacttaaggctattatcgatcgaaacactacacaaagagct
gaacagttgattgaatggagtgctcatagttcccattatcggcctaggcctgccccttca
ttgctggatctttccttaaatgttcttgccaagaatcctgatgcagtttcttcatttgag
gatgtccctgattggttaaagcgaaggatcgtcaacttgctctgtgatgtgcatacaatg
gatattcgtatattggagttgcttttcgaaggttctcctactgagatacgtgtcaagaat
tgttcgtggatgacagaaaaacaacttgttgatatgcttaaaaaatctgatttgcaaaac
ctgagagtgcttcaacttgactcttgtgggcaatgctcatttgatgacatcatttgtaat
tccttggctttacctccaaacagcttggcttgtttagggatcttgtccctaagggctgca
gctcgtttatctgacaacactctaaggcgtcttcttgtgtcagcacccttgcttcagtct
attaatttaggccagtgctcactcctcacctgcgatggcattaaaattttagctgattct
ttgaaaacaaatttgaaggagctatatatagatcaatgcccaagaatagatgccatgcac
tctttatcatcaatgatgcagtttgaacatttggaagttatttcagtggcagaaattcca
actgtcagtgataaatttgttatgtgcatcactagagcatgtggtagaacactaaaggag
cttaatctggccggttgcgtgatgttaacagatgggagtttgcaagctattggacatttt
tgttccgatttatgttcactcaacatttcaaatctaaattatgtgacagatttgggtctg
tgttatctagctgatggttgtaggtcacttgaatcactcaatattgctcgtgcgggtttc
agtgatgtagttgttgctgcttttctggaaacttctggagggtccttgaaagaactttca
ttaaatcatgtccgcaaggttagcttcaactctgcttttgcccttgccaaattctcaagg
aaattggtaagtttggatctatcatggtgccgccaagttacagatgaagcacttgggttt
attactgataactgctcatcactaaagctgttgaaaatctttggatgtacccagatcaca
gacacttttgtactcggccgtgcaaactcacaggtgcacgttgttggacgggactcggtt
tcagtgttggaccatgtcaagatgtttgagcctgtggaagttctgctacattattcccct
ctggagactcctgctgcacttgcccataacgatggcatgtaa
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