Cynara cardunculus var. scolymus (artichoke): 112500228
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Entry
112500228 CDS
T05604
Name
(RefSeq) chloride channel protein CLC-d
KO
K05016
chloride channel 7
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccav01009
]
112500228
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccav04131
]
112500228
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ccav04040
]
112500228
Protein phosphatases and associated proteins [BR:
ccav01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112500228
Membrane trafficking [BR:
ccav04131
]
Endosome - Lysosome transport
Others
Lysosomal membrane proteins
112500228
Ion channels [BR:
ccav04040
]
Chloride channels
Chloride channel (CLC)
112500228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Voltage_CLC
CBS
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
112500228
NCBI-ProteinID:
XP_024959382
LinkDB
All DBs
Position
LG 17:complement(13039798..13071786)
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AA seq
793 aa
AA seq
DB search
MLSNHLQNGVETAKLIWSRLPNAEDVSDAEPDEDGVLRNDGFGGVESLDYEVIENYAYRQ
EQARRGKLYVWYYVGVKWFFALLIGIGTGLAAVLINISVENFAGWKYSLTFRIIQSSYVA
GFIVYTVINLALVFSSVFIITQFAPAAAGSGIPEIKGYLNGIDTRGILLFRTLIGKISGS
IGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLSTRWLQVFKSDRDRRDLVTCGCA
AGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAVVAVVVRTAMGWCKSGKCGHFG
SGGFIIWDVSDGQEDYSFEELLPMAIIGVIGGLLGALFNQLTLYITYWRRNYLHKKGNRV
KIIEACLISVITSVISFGLPLFRKCSACPDSDVTSECPRPPGMYGNYVNFYCTKDNEYND
LATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLAMFYSLAVVTFGTAVPAGQFVPGIMI
GSTYGRLVGMFVVRLYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLP
LIMLVLLISKAVGDAFNEGLYEEQARLRGIPLLESRPKNLMRKMTAKEACGNQKVSYFTR
VVKVADVANILRTNSHNGFPVVDHTRTGETMVIGLILRSHLLVLLQSKADFQHSPLAVDM
RSQSIPIRHSLSDFVKPVSSKGLSINDIHLSPDDLEMYIDLAPFVNPSPYVVPEDMSLTK
VYNLFRQLGLRHIFVVPRASRVIGMITRKDLLFEDNEDSGPVELQSTSVRGRQQGGSTRN
PEVEHPLLNGLLE
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgctatcgaaccatcttcagaacggtgtggagaccgccaagctaatttggtctcggttg
cccaacgcggaagatgttagtgacgccgagcctgatgaagatggggttttgagaaacgat
ggatttggtggtgttgaaagtcttgattatgaagtcattgagaactacgcctatcggcaa
gaacaggcgcgaagaggaaagctttatgtttggtactacgtgggagttaaatggttcttt
gctctgctgattggcataggcactggcttagctgctgttctcatcaatatctctgttgag
aattttgctggatggaagtactcgttgacttttaggataatacagagttcatatgtggct
ggatttattgtatataccgtgatcaacttggctttagtcttttcatccgtttttatcatt
acacaatttgccccagcagcagcaggatctggtatacctgaaatcaagggttatttgaat
gggattgatactcgtggtatccttctctttagaacgttgataggaaagatatctggaagc
atcggatctgtgggtggtggactggcacttggtaaagaagggcctctagttcatactggt
gcttgtattgcttccttacttggacagggtggatcaacaaaatatcatctgagtactagg
tggctacaggtctttaagagcgatcgtgatcggcgtgatcttgtaacatgtggatgtgca
gctggtgtggctgctgctttcagagctccagttggcggtgtattatttgctctagaggaa
gttacatcttggtggaggagtcagcttatgtggcgtgttttcttcacttctgcagttgtg
gctgttgtagtgcgtactgcgatgggctggtgtaagagtgggaagtgtgggcatttcggt
tctggaggtttcataatatgggatgtctcagatggtcaagaggattactcatttgaggag
ttattgccgatggctattattggtgttataggtggccttcttggagcgttatttaaccag
ctgacactttatataacatattggcgtcgaaattatctacacaagaaaggaaaccgagtc
aaaataattgaagcatgtcttatctccgtgataacctcagtaatctcatttggattgcct
ctttttagaaaatgtagtgcatgccccgactcggatgttactagtgaatgtcctcgtcca
ccaggaatgtacgggaattacgtaaatttttattgtaccaaggacaatgaatacaacgac
cttgcaaccatcttctttaatactcaggatgacgccataagaaatctgttcagtgcgaag
accattcatgagtacagcgcccagagcctgctgacttttttggctatgttctatagctta
gccgtggtgacatttggtactgctgttccagctggacaatttgttcctggcataatgatt
ggatcgacgtatgggcgccttgttggcatgtttgttgttaggctatacaaaaagctgaac
attgaagaaggaacgtatgctttacttggagctgcttccttcctaggaggttcaatgcga
atgacagtctcactctgtgttattatggtagaaattacaaataacttaaagctcttacct
cttatcatgcttgttctcctcatttcaaaggctgtcggtgatgctttcaacgaaggttta
tatgaagaacaggctagattaaggggtattcctttacttgaatccagacctaaaaacctg
atgagaaaaatgacagcaaaagaagcctgtgggaatcaaaaggtttcttacttcactcgt
gtggtgaaagttgctgatgtagccaatatcctaaggacaaacagtcacaacggcttccct
gttgtggatcacacacgaactggagaaacaatggtcattggtcttattttgcgcagtcac
ctattggtacttctacaatccaaggcagattttcagcatagccctcttgcagttgatatg
agaagccaatctataccaatcaggcacagtcttagtgactttgtgaagcctgtttctagt
aaaggattatcaataaatgatatccatctaagtcctgatgatctggaaatgtacattgat
ctagccccgtttgtgaatccatcaccgtatgttgtccctgaagatatgtctttaacgaag
gtttataatctgtttcgtcaattaggattgaggcatatatttgtagttcctcgtgcttct
cgtgtgattggcatgatcaccagaaaggacttgttatttgaggacaatgaggattcaggt
cctgtagagctccagtcaactagtgtaaggggtcggcaacaaggaggtagtacaaggaat
ccagaggttgagcatccgctacttaatggtcttctggagtaa
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