Cynara cardunculus var. scolymus (artichoke): 112500328
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Entry
112500328 CDS
T05604
Name
(RefSeq) nuclear pore complex protein NUP160 isoform X1
KO
K14303
nuclear pore complex protein Nup160
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112500328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112500328
03036 Chromosome and associated proteins [BR:
ccav03036
]
112500328
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112500328
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
112500328
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUP160_helical_2
Beta-prop_Nup120_160
TPR_NUP160_120_M
TPR_Nup160_C
HEAT_Nup120
ANAPC3
Motif
Other DBs
NCBI-GeneID:
112500328
NCBI-ProteinID:
XP_024959556
LinkDB
All DBs
Position
LG_17
Genome browser
AA seq
1505 aa
AA seq
DB search
MAARSSLAGIEVPIIGSDSIKWFHVSVPSTSTSTSTPPSPPEPFAPPTEDASSCCNIGDP
PTYFIWRINKTSPNILEIVEFCSFAEFPRVGLQIEFANALCPFALICKNEFSSSSGNPYM
LYTLTAAGVAYLIRLTDITNYASCSVFPPNEVVELNIQSYCNYGAITATSATAGCLIIGG
RDGSVGCFGLGILDPSVPGFLHELRDDSSFGRLWNLMSRKTIAAVKGLLCLEIQGKKLIF
VLHLDGVLRVWDLLSCSRLLSYTMNASTLEGTTFTRLWAGETNNDTSTMPLAILHKINSE
VDAEMISLYSLHFSLEGNTNLFLEPSTLNISLEEGALIDVKLSSNKIWILKEDGLLLHNL
GSSESRYEQCFGLQEAFVAEQLFQSSEHSADDLFWLAHSLYPSAKEQISPHVSTIFLRML
FLPGIYHNSVLRATLQEHNKHLTDSEFHSLTADGMKKEIVSVIEHEGVSRSSLSLLYCWK
NFCSHYLDNWCNKNAPCGLLLDSASGAIGLIRKSSVSVLRCLEDIELLAFGSFDELGEIA
SSRINLSGDLEREVLFEVLRCTSSLSQQLGKGAAALFYESFFSEPSMSPEDVVGCLLKTL
ETRSTSSIAALHVSEVGVDTAWEKEVGDHKILRKFSADMFLSLHGLYRKASMWDQVVDVI
LKYLNFLVPQKIEQKLDYEAIFDISACITVQVTSQVAKVMFESAVDMLLLLSYMVKLGGQ
INMLPDDVSRVQLELFPLIQEIITEWHIIHFFGTRPCESPAMEDFSSQLSLLQIDSSIDR
RSWNDKLGKCDFTLAFILLLDHQSSFGDQSRVDSRHLPHPSSFIAPVRNFISWIVWGRSE
DGSSSFSSRSTMLALILLKHGQFDAVEHLLTLVNQNLLKEKLSSSIQGVNDEWCMLLHLL
GCCLLAQAHRQTPRTSTDKKVHEAICCFFRVASLHGASKSLQSLSYESRFPHLGFSDHIS
PAAWKLHYYQWAMQIFEQYNMSAGACHFALAALEQVDEVLGLKDTYSGEDFLSESPTTAK
GRLWANVFKFTLDLNDYYDAYCAIISNPDEESKYICLRRFIIVLYERGAIKVTFSILSVG
CILCDGQLPFIGLTEKVEQELAWKAERSDVSVKPNPYKLLYAFEMHQHNWRKAASYMYLH
SIQLKSEAALKDYQLRSLALQERLNCLSATINALHLVRPTCAWINPLLQGKSIQKELYPS
KKARITIPEQEANGHLSSQKLDSCMDIEKLENEFVLTSAEYLLSLANIKWTFTGIEKPPP
NLVELLVQSNLYDMVFTVILNFFKGSALKRELERVFIAMSLKCCPSRENYKKHGLLLTSS
KDEAIHDSHDIIPAAQHCKGNDQWDALEQYMEKYKCFHSRLPVVVAETLLYADRLIELPL
WLVQMFKCTLKGNWGMAGAESSPASLFQLYVDYGRYAEATNLLLHYIESVAAVRPADVIR
RKKTSAVWFPYTTIERLWCKLEELISSGHMVHQCEKLRTLLLAALLKHFKLLNVDSEDVM
SSSTS
NT seq
4518 nt
NT seq
+upstream
nt +downstream
nt
atggcagctcggtcgtcgttagctggtatcgaggttcccataattggcagcgactccatc
aaatggttccatgtctccgtcccttcaacttctacatctacatcgactccgccatcaccg
cctgagccctttgctcctcccaccgaagatgcatcatcttgctgcaacattggagaccct
cctacctatttcatttggagaataaacaagacttccccaaatatcctggagatagtggaa
ttctgtagttttgcagaatttccaagggttggattgcagattgaatttgctaatgcactc
tgtccatttgctttgatatgcaaaaatgagttctctagttcttctggaaacccatacatg
ctttacacgttgactgctgctggagttgcttaccttattagactgactgatattaccaac
tatgcatcgtgctctgtttttccacctaatgaggttgttgagttgaatatccaaagttat
tgtaattatggagccataacggctacatcagcaaccgctgggtgccttataataggagga
agggacggatcggttggttgtttcggacttggcatccttgatcctagtgttccaggtttt
ctgcatgaactacgagatgattccagttttggtcgcttgtggaatttaatgtcgaggaag
actattgctgccgtgaagggtctgttatgtttagagattcaagggaaaaaacttattttt
gtgcttcatttggatggagtattacgagtgtgggaccttttgagttgtagtagacttctt
agttataccatgaatgcttcaacattggaaggtactacattcacgaggttatgggcaggt
gaaactaacaatgatacaagtacaatgcctttggcgattctgcataaaattaattcggaa
gttgatgcggagatgatctccttgtacagtttgcattttagtctggaagggaacactaac
ctttttcttgagccttcaacattgaacatctctctggaggagggtgcactcattgatgtc
aaactttcttcaaataaaatctggatactcaaagaagatggattgctactgcacaattta
ggttcaagcgagagccggtacgagcaatgctttggtttacaggaagcatttgttgcggaa
caattatttcaaagctctgagcattctgcagatgatcttttttggcttgctcattcacta
tatccatctgcaaaggagcaaatttcccctcatgtgtctacaatcttcttgcgtatgcta
tttcttcctggcatttaccataattctgttctccgagcaacactacaagaacataacaag
cacttgactgattctgagtttcactctttaaccgctgatggaatgaaaaaggagatcgtt
tctgtaattgagcatgagggtgtttccaggagttctctttcacttctatactgctggaag
aacttctgttcgcactacttggacaactggtgtaacaagaatgcaccgtgtgggttactt
cttgattcggcttctggtgctattggtttaataagaaaatcctcagtttctgtattgcgt
tgtttggaggatatagagcttcttgcctttgggtctttcgatgaactgggtgaaattgca
agctctaggatcaacttatctggtgatcttgaacgggaagtactttttgaggtgctgcga
tgcaccagtagccttagccaacagctaggaaaaggcgctgctgctttattttatgaatct
tttttcagtgaaccatctatgtctcctgaagatgttgttgggtgtttgttgaagacttta
gaaaccagatctacttcttcaatagcagctctccatgtttcggaggtaggtgttgatact
gcatgggagaaggaagtgggtgaccacaaaattcttcggaagttctctgcagatatgttc
ttatctcttcatggtttgtaccgcaaagcttcgatgtgggaccaagttgtggatgttata
ttaaagtacttgaactttttagtgcctcaaaagattgaacagaaattggattatgaagca
atttttgacattagtgcttgcataacagtccaagtgacgtcacaagttgccaaagtgatg
tttgaatctgcagtggacatgttattgctgctgagctacatggtgaagttaggtggccag
ataaatatgttacctgatgatgtttccagggtgcaactcgagttatttccattgattcaa
gaaattattactgagtggcatataatacatttctttggaaccagaccttgtgaatcacct
gccatggaagatttcagttctcaactctctttattacaaattgatagcagcatcgaccga
agatcatggaatgacaagcttggcaaatgtgacttcactttggcttttattctcttactt
gatcatcaaagttcatttggagatcagagccgtgttgattcaagacatcttcctcacccc
agctctttcattgctccagtacggaacttcataagctggatagtttggggcaggagtgaa
gatgggtcgtcttctttttcgtctcgctcaactatgcttgctttgatcttgcttaaacat
ggacagtttgatgctgttgagcatcttcttactttggtgaaccaaaatcttctcaaggag
aaattatctagcagtatccagggtgtaaatgatgaatggtgcatgctccttcaccttctt
ggctgttgtctgcttgcacaagcacaccgtcaaacaccacgaacttctactgacaagaaa
gttcatgaagctatttgctgctttttcagagttgcatctttgcatggggcttcaaagtcg
ttgcagagtttgtcatatgaatccagatttcctcaccttggtttctctgatcatatctcg
cctgcagcttggaagcttcattattatcagtgggcgatgcagatatttgagcaatataat
atgagtgcaggtgcctgccattttgctcttgctgctcttgaacaagttgatgaagttttg
ggtcttaaagatacttactcaggggaagattttctcagtgaatcaccaactactgctaaa
ggacggctttgggctaatgtatttaaatttacacttgatttgaacgattactatgatgca
tattgcgcaattatttcgaatccagatgaagaaagcaaatacatttgcttgaggcgtttt
atcatcgtcctttatgagcgtggtgcaattaaggttactttttcaatactttcagttggt
tgtattctttgtgatggccaattgccttttattggtttaaccgagaaggttgagcaggag
cttgcttggaaggcagagcgttcagatgtttcagtaaaaccaaacccttataaattgcta
tatgcatttgaaatgcatcaacataactggcgcaaggctgcaagttatatgtaccttcat
tcaatacaactgaaaagtgaagcagctttgaaagattaccaactcagatcgttggctctt
caagaaagattgaactgcctttctgccactataaatgcactgcatcttgttcgtccaacc
tgtgcatggatcaatccattgcttcaaggaaagtctatacagaaagaattatatccaagt
aaaaaggctagaataacaattccagagcaggaagctaatggtcatctctcaagtcagaaa
ctggattcctgcatggatattgagaaacttgaaaatgagtttgtgttaacatcagcagaa
tatttgctctctctagcaaatattaaatggacatttactgggattgagaaacctccacca
aatttggttgagttgctggttcagtcaaatctatacgatatggttttcacagtaattcta
aatttttttaagggttcagcattaaagagggaactggaaagagttttcattgccatgtcg
ttgaaatgctgtccaagcagggaaaattataaaaagcatggtctgctcctaacatcatca
aaggatgaggctattcatgattcccatgacataattcctgcagcacaacattgcaaggga
aacgatcagtgggatgcacttgagcaatacatggaaaagtataaatgttttcattctaga
ttaccagtagttgttgcagaaacccttctctatgctgatcgattgattgagcttcctctt
tggcttgtgcagatgttcaagtgcacactcaagggaaactggggcatggctggggcagaa
tcaagtcctgcatcactgttccaactctatgtcgattatggacgatatgcagaagctact
aatctgctgcttcattatattgagtctgttgcagcagtgagaccagctgatgtcattcgt
cggaagaagacatctgcagtctggtttccatacacaacaatcgagcggttgtggtgcaag
cttgaggaattaattagttcgggccatatggtacatcaatgtgaaaagctaagaacactg
ttactggcggctttgctcaagcatttcaaactgctaaatgtagactcggaagatgtaatg
tcctcttcaacgtcttga
DBGET
integrated database retrieval system
