Cynara cardunculus var. scolymus (artichoke): 112500343
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Entry
112500343 CDS
T05604
Name
(RefSeq) zinc finger CCCH domain-containing protein 49-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112500343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112500343
Spliceosome [BR:
ccav03041
]
Complex B
Other components
Prp19-related factors
112500343
Complex C
112500343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH
zf-CCCH_3
zf-CCCH_10
zf-CCCH_4
RRM_YTH1
RRM_occluded
zf-CCCH_PARP12
RRM_3
Motif
Other DBs
NCBI-GeneID:
112500343
NCBI-ProteinID:
XP_024959585
LinkDB
All DBs
Position
LG_17
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AA seq
497 aa
AA seq
DB search
MAHRILRDVEADGWERSDFPIICESCLGDNPYIRMTKANYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
EHDRRARAGLDYESSYGKARPNDTILKLQRTTPYYKRNRAHICSFFIRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVALKLLNKAGDMPSLEPPEDESIRTLYVGGLDARVS
EQDLRDNFYAHGEIESVKMVLQRACAFVTYTTREGAEKAADELSNKLVVKGLRLKLMWGR
PQAPKAEGEVVSDEARQQSIAHSGLLPRAVISQQQNQMIQPPGTSAGQDQQPPPQMHYFN
IPPPPPQHGRAFYPSMDPQRMGAVIPSQDGSGASGLGENRSGAGSSDQRQQGGPHYAAYP
PPPPPPQGGGQYYQQYYPPAPYGYAPPPPTQPYQQYPPQSHPSAMPPPGPSGEQAYQQKA
PPPAAAAGPPPPSPQQQ
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggcacataggatattaagagatgttgaagccgatggttgggaacgctccgacttccca
atcatttgcgagtcatgcctaggtgacaatccctacattcgaatgacaaaagcaaattat
gataaggagtgcaagatctgcactaggcccttcacagtcttcaggtggagacctggtcgg
gatgcaagatacaagaaaagtgaaatttgccaaacttgcagcaagttgaaaaacgtttgc
caagtgtgccttctcgatcttgaatatggcttgccagttcaggttcgtgatactgcgctc
agtatcaactcgaatgatgccattccaaagagtgatgtgaacagggaatactttgcagag
gagcatgatcgtagagcaagagctggtctggattatgaatcctcatatgggaaggcacgg
ccaaatgatactatattgaaactgcaaaggacaacaccatattacaagagaaaccgagca
catatttgcagttttttcatcagaggtgaatgtacaagaggtgctgaatgcccttaccgg
catgagatgcccgtcactggcgagttatcacagcagaatatcaaagaccgttactacgga
gttaacgatccagttgcattgaaactactgaacaaggcgggtgacatgccatctctcgaa
cccccagaggacgagagcattcgaaccctatatgtgggagggcttgatgccagagtctca
gagcaagaccttagggacaatttctatgctcatggtgaaattgagtccgtcaagatggtt
ctccaacgtgcttgtgcctttgttacttacacgactcgagaaggggcagaaaaagcagct
gatgaactctcaaacaagctggttgttaaagggcttcgcctaaaacttatgtggggtcga
ccacaagcacctaaggctgagggtgaagtagtctcagatgaagccagacaacaatcaatt
gcccacagtggattattacccagggctgttatatcgcagcagcaaaaccaaatgattcag
cccccaggaacttccgctggtcaggatcagcaaccaccgccacagatgcattattttaac
attccgccaccaccgcctcagcatggcagagccttttatccctctatggatcctcagagg
atgggtgcagtgataccttctcaagatgggagtggggctagtggtttaggtgagaataga
agtggcgctggcagttcagatcagcggcagcaaggtggtccacattatgctgcataccca
ccaccaccaccaccgcctcaaggcggtggccaatactatcagcagtattatccaccagcc
ccatatgggtatgctccgccgccaccgactcaaccatatcaacaataccctccacagtct
catccatccgcaatgccaccaccaggaccaagtggtgaacaagcatatcagcagaaagca
ccaccaccagcagcagcagcagggccaccgccaccatccccacaacaacaatga
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