Cynara cardunculus var. scolymus (artichoke): 112500359
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Entry
112500359 CDS
T05604
Name
(RefSeq) cyclic nucleotide-gated ion channel 1
KO
K05391
cyclic nucleotide gated channel, plant
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
112500359
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ccav04040
]
112500359
Ion channels [BR:
ccav04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
112500359
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GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
112500359
NCBI-ProteinID:
XP_024959609
LinkDB
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Position
LG 1:complement(194925..200512)
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AA seq
723 aa
AA seq
DB search
MNHPPEKFVRFQDWKSDNSNGQYSTSNGGSSQRFRSTLGSVSNMFRKSLEHGSGGFKSLK
RSMESHSLNRILSRGLGSGKKTLNPQGKFLQKWNKIFVLSCVIAVSVDPLFFYIPIVKDD
KKCLDLDKKLQITASVLRSFTDIFYIVHIIFQFHTGFIAPSSRVFGRGVLVEDAWEIAKR
YMSSYFLVDILAVLPLPQVVILIIIPKMHGSRSLNTKNLLKFVVFFQYIPRMLRIYPLYK
EVTRTSGILTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETTCWRQACGNISATIVD
GTTPGCVHSSFYCQDESHPVGYLNSRCPIQESNNTPYDFGIFLPALQSGVVNSTDFPQKF
FYCFWWGLQNLSSLGQNLKTSTFVWEICFAVSISIAGLVLFSFLIGNMQTYLQSTTLRLE
EMRVKRRDAEQWMSHRLLPDPLKERIRRYEQYKWQETRGVDEDNLIRNLPKDLRRDIKRH
LCLQLLRRVPMFEKMDDQLMDALCDRLKPVLYTEDSYIVREGDPVDEMLFVMRGKLLSVT
TNGGRTGFFNSDYLRAGDFCGEELLTWALDPHTSSNLPISTRTVQALEEVEAFALMADDL
KFVASQFRRLHSKQLRHTFRLYSQQWRTWAACFIQAAWRRHCRKKLEDSLREEEDRLQNA
LTGGGGSGGSSPSLGATIYASRFAANALRALRRNGARKTRISEKLPPLMLQKPAEPDFTS
EDK
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatccacctgagaagtttgtgaggtttcaggattggaaatcagataacagcaat
gggcaatactctacaagtaatggaggttcttcacagagatttagatcaactttaggttca
gtttccaatatgttccgaaaaagcttggaacatggttctggagggtttaaaagcttgaaa
agatcaatggaatctcattccttaaataggattctgagtagaggccttggttctgggaag
aaaacgctcaacccacaagggaaatttcttcagaagtggaacaaaatatttgtgttgtcg
tgtgtgattgctgtttctgtggatccgttattcttttatattccgatagtcaaagatgac
aagaagtgccttgatttggacaagaagttgcagatcacagctagtgttttgcgttccttc
actgatatcttctacatagttcatattatctttcagtttcatactggttttatagctcct
tcttcccgagtatttggtaggggtgttctagttgaggatgcttgggagattgcaaagaga
tatatgtcctcctactttcttgtggacattcttgcagttcttccattgccacaggttgtg
attctgatcatcataccgaagatgcacgggtcaagatctttgaatacgaaaaacttgttg
aagtttgttgttttcttccagtacatcccgaggatgcttcgaatctatcctctgtataag
gaagtcacaagaacttctggaatacttactgaaactgcatgggctggagctgctttcaat
ctcttcctttatatgctggctagtcatgtatttggggccttttggtacttgttctctatt
gagcgtgaaaccacctgctggcgacaggcatgtggaaatatatcagcaacgattgtagat
gggacaactccaggctgtgtccattcttcattttattgccaggatgaatcacatcctgtg
gggtatttgaattcaagatgccccatacaggaatcaaacaacactccttatgattttgga
atctttcttcctgcccttcaatctggtgttgtaaactcgactgattttccacaaaaattc
ttctactgtttctggtggggtctgcaaaatctgagttcgcttggtcaaaatcttaagacg
agcacctttgtgtgggaaatttgcttcgcggtgtccatctctatagctggtctggttttg
ttctcatttctcattgggaatatgcagacgtacctgcagtccacaaccctaagattggag
gagatgagggtgaaaagacgagatgcagagcagtggatgtcccaccgtttgcttccagat
cctcttaaggagcgaatcaggaggtatgaacaatataaatggcaggaaactagaggtgtt
gatgaagataatttgatccgaaaccttccaaaggacctcagaagggatataaaacgacat
ctatgtttgcaactgctaaggagggttcccatgttcgaaaagatggatgaccaactaatg
gatgcactatgtgaccgtctcaaaccagtcctttataccgaggatagctacatcgtgagg
gaaggggacccagttgatgagatgctctttgtaatgcgaggcaaattattgtcggttaca
accaacggaggtcgaacgggcttctttaactctgattatctgagagcaggtgatttttgt
ggtgaggagcttcttacatgggccttggatccccatacatcatccaacctcccaatctct
acaagaactgtccaagcacttgaagaagtggaggcatttgccttgatggctgatgacctg
aagtttgtagcctctcagttccgcagacttcacagcaagcagctacgccatactttcagg
ctctactcgcagcaatggagaacgtgggcggcttgtttcattcaggcggcatggcggcgg
cattgtaggaagaagttggaggactcacttcgggaagaagaagacaggctgcaaaatgcg
ttaactggaggcggtgggagtggtgggagttcacctagtttgggtgccacaatttacgca
tcaagatttgcggctaacgcgctccgtgctttgaggcgaaatggtgcaaggaaaacaaga
atttctgagaaattaccacccttgatgcttcagaagccagcagagccagatttcacttct
gaagataaatga
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