Cynara cardunculus var. scolymus (artichoke): 112500370
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Entry
112500370 CDS
T05604
Name
(RefSeq) serine/arginine-rich splicing factor SR30
KO
K12890
serine/arginine-rich splicing factor 1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112500370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112500370
Spliceosome [BR:
ccav03041
]
Common components
Common spliceosomal components
SR proteins
112500370
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Nup35_RRM_2
FlhF_2nd
Motif
Other DBs
NCBI-GeneID:
112500370
NCBI-ProteinID:
XP_024959621
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All DBs
Position
LG_17
Genome browser
AA seq
291 aa
AA seq
DB search
MGRSNRTLYVGNLPGDIREREVEDLFYKYGPIVEIDLKIPPRPPGYAFVEFEDPRDAEDA
IHGRDGYKFDGHRLRVELAHGGRVSSSVDRYSSYSSGGSRGGLSRRSDYRVLVTGLPSSA
SWQDLKDHMRRAGDVCFSQVFRDRDGMRGIVDYTNYDDMRYAIRKLDDSLFRNQFSKAYI
RVEEYDQRRSYSRSRSRSPYYSRSRSPSRSYSYSSRSKSYSPRDIRSRRSRSRSVSSRPR
SDSSLTPASRSRSRSRTPPASSRDRRRAGRSPSRSSSQSILRSRSPSVISD
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgggccgctcaaaccgtactttgtatgttggcaatcttcctggtgatattcgtgaaaga
gaagttgaagatttattttacaagtatggacccattgttgagattgaccttaaaattcca
cctaggcccccaggttatgcttttgtagagtttgaagatcctcgtgatgctgaagatgcc
atccatgggcgggatggctataaatttgatgggcaccggttacgagttgaacttgcacat
ggtgggagagtttcgtcttcagtagatcgctatagcagttacagcagtggaggcagtcgt
ggaggactctctaggcgctcggactatcgtgttttggtcacaggattaccttcttctgct
tcctggcaagatctgaaggatcacatgcgccgagctggtgatgtttgtttctctcaagtt
tttcgtgatcgtgatggcatgagggggattgtagactacacaaactatgacgacatgaga
tatgcgataaggaaactcgatgactccctcttccggaaccagttttccaaggcctacata
cgggtggaggagtatgatcaaagacgtagctactctaggagccgcagtcgtagtccatat
tattcaagaagcagaagtccaagtcgcagctatagctacagtagcaggagcaagagctac
tcacctagggacattcgttctcgccgttctcgttcaagatcagtttcttcacgtccacga
tctgactcgtctcttactcctgcttcaaggtctcggtcgaggtctcgcacgccaccagca
tcttctcgtgaccgtaggcgggctggtagaagccctagcaggagcagtagtcaaagcatt
ctccgttctcgctcaccatcggtgatatcggattga
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