Cynara cardunculus var. scolymus (artichoke): 112500506
Help
Entry
112500506 CDS
T05604
Name
(RefSeq) protein CHROMATIN REMODELING 35-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112500506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112500506
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
112500506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
112500506
NCBI-ProteinID:
XP_024959773
LinkDB
All DBs
Position
LG 17:complement(4413751..4421945)
Genome browser
AA seq
990 aa
AA seq
DB search
MDVEDLMNTHYSTISTPSETVNGQMNNSEESVSPRPLYTAYTLDANKPMKTVDHSDPFTI
RNWVEEIDSAKYGSVTKDIEDLLLLRKQMLMPCFKRFPSLRADLMDVNSVKEASTANPTR
DIVMVDNDMGHDTIAPDSVVIIGSDDDEPTYGRPFQPYRDIVLSKPEGQFLMKQFLVSSP
NFFVIFSEALNLLAGKLCSSLKDLTEYESMACREGDYSPGQSSAGKGGKGRGGGGGGAGG
GGGGGKGRGRGRPKGPRGGEGVEGGHTNAVESKDGEHTNAVDSKDREDKNVGSDVEVDRK
HDKGEYVGVESDSDMEESDSQSDVNFDGLADIWKEMNVGLESSKDAAMDISSNEHVREDG
EECDHSFILKEDIGYVCRVCGVVERSIESIIEFQRPKSSKSTRTYWHESRSDRSGEAAGP
VLDGVKLPGKDFSVGDISAHPRHKKQMKPHQVEGFNFLLSNLVSENPGGCILAHAPGSGK
TFMLISFIQSFMAKYPDARPLVVLPRGILATWKKEFNRWQVEDIPLFDFYSLKADSRAQQ
FEVLKQWANLRSILFLGYKQFSSIVCDNDRSSTAASCQEILLTYPSILILDEGHTPRNQD
TDVLTSLEKVQTPRKVVLSGTLYQNHVREVFNILNLVRPKFLRMENSKMIKRRILSRVPI
ESRRNLFKKSTDNEFYELVEHTLLKDENFKRKVMVIEDLREMTSKVLHYYKGDFLDELPG
HVDFSVFLNLSPRQKREVSELRKLARKFKISSDGSAIYVHPELKSLAKTGTKERGDDNVN
KIDELLERLDERDGVKAKFFLNLLRLCESSGEKLLVFGQYLLPLKFLLRLTVKVKGWSLG
KEIFMITGDHDNDEREVAMDLFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPS
VTRQAIGRAFRPGQERKVYTYRLIAAASPEEEDHTTCFKKESIAKMWFEWNEYCGHHEFE
METTDVKECGDQFLETTWLNEDVAALYKRS
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcgaagacctgatgaacacgcattatagcacgatttctacaccctctgaaaca
gttaatggtcaaatgaacaacagtgaagaaagtgtatctccgaggccactgtacactgca
tacacattggatgcgaacaagccgatgaaaactgttgatcattcagatccgtttactatt
agaaactgggtggaagagattgattcagctaaatatgggtctgtaacaaaagacattgaa
gatcttcttttgctaagaaaacaaatgttgatgccttgttttaagaggtttccatcactt
agggctgatttgatggatgtgaattctgtgaaggaagcatccactgcaaatcctacgagg
gatatagttatggtagataatgacatgggtcatgatacaattgcacctgattctgttgtc
atcattggctcagatgatgatgagccaacatatgggaggccttttcaaccatatcgagac
atagttttaagtaagcctgaagggcagtttttaatgaaacaatttttggtaagctctcct
aacttttttgtgattttcagtgaagctctgaacttgcttgctgggaaactgtgcagttct
ctgaaggatcttactgagtatgaatcaatggcttgcagagaaggagattattccccaggc
caatcttcagctgggaaaggagggaaagggagagggggtggtggaggtggagctggaggt
gggggtgggggtgggaaagggagaggaagagggagaccaaaaggaccaagaggaggagaa
ggtgtagaaggagggcatacaaatgctgttgaatccaaagatggagagcatacaaatgct
gttgattccaaagatagagaagacaagaatgtcggttctgatgtagaggttgataggaag
catgataaaggtgagtatgtcggtgttgaatctgattcagatatggaggaaagtgattca
caatctgacgtcaacttcgatgggttggctgatatatggaaagaaatgaatgttggatta
gagtcctcaaaggatgctgctatggacatttcatctaacgaacatgtgagagaagatgga
gaagaatgcgatcattcttttatattgaaggaagatattggttatgtttgtcgtgtttgt
ggagtagttgaaaggagtattgagtccataattgagtttcagcgtcccaagagctcaaag
agtacgagaacttactggcatgaaagccgatctgatagatcaggggaggcagctggtcct
gttcttgatggagtgaaattaccaggaaaggacttctctgtgggtgacatatctgctcat
ccaaggcataaaaagcaaatgaaaccccatcaagttgagggcttcaattttctgctcagt
aacttggtttctgagaatccaggtggttgcatcctggctcatgctcctgggtctggaaag
acatttatgctcatcagtttcatccagagttttatggccaagtatccagatgctagaccg
ttggtggtactacccagaggtatcctggcgacatggaagaaagaattcaatagatggcaa
gtcgaagacataccattgtttgacttctactcgttaaaggctgatagcagggctcaacaa
tttgaggtgctcaaacagtgggccaacttgaggagcattctgtttcttggatacaagcag
ttctcgtcaatagtatgcgacaatgataggagctccactgcagccagttgccaggagata
ctgttgacatatccttcgattttgatattagatgaagggcacaccccaagaaaccaagac
actgatgttttgacctctcttgagaaggtccagacaccgaggaaggtggttctttcggga
actctctaccaaaatcacgtgagggaggtgttcaacattctgaaccttgttcgtccaaag
tttttaagaatggagaattctaaaatgataaagagacgtatcttgagtagagtaccaata
gaaagccggagaaacctcttcaagaagagcacagacaatgagttctatgagttggtagag
catacattactcaaagatgagaatttcaagaggaaggtaatggtcattgaagatctacgt
gagatgacaagcaaagttcttcactactacaaaggggatttcttggatgaactaccaggg
catgtggacttctcagtcttcctgaaccttagtcctaggcaaaagcgggaagtttcggag
ttgagaaagttagcaaggaaatttaaaataagctctgatggtagtgcgatttatgtgcac
ccggaactgaagtctcttgcaaaaactggcaccaaagagagaggtgatgataatgtaaac
aagatcgatgaactcttggagagattggatgagagagatggagtgaaggcaaagtttttt
ctcaatctacttcgcctatgtgagtccagtggggaaaaacttctagttttcggtcagtat
ctgttgcccttaaaatttttgctcagattgacagtgaaggtcaagggctggagcctcggc
aaggaaattttcatgataactggagatcatgacaatgacgagcgagaggtagcaatggac
ctattcaacaactctcctgatgccaaagtcttctttggatcgatcaaggcttgtggggag
ggcatatcactagttggggcctccagaattataatattggatgtgcatctaaacccttct
gttacccgccaagcaataggtcgtgcatttcgaccagggcaagaaaggaaggtatacact
tatcggttaattgctgccgcttcccctgaagaggaagatcatactacttgcttcaagaaa
gagtcaatcgcaaaaatgtggtttgagtggaatgaatactgtggccatcatgagtttgaa
atggagacaactgacgtcaaggaatgtggtgatcaatttctagaaactacatggttgaat
gaagacgtagctgcattatataaacgatcatga
DBGET
integrated database retrieval system
