Cynara cardunculus var. scolymus (artichoke): 112500593
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Entry
112500593 CDS
T05604
Name
(RefSeq) sm-like protein LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112500593
09123 Folding, sorting and degradation
03018 RNA degradation
112500593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112500593
03041 Spliceosome [BR:
ccav03041
]
112500593
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112500593
mRNA degradation factors
5'-3' decay
Lsm complex
112500593
Spliceosome [BR:
ccav03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
112500593
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
112500593
NCBI-ProteinID:
XP_024959870
LinkDB
All DBs
Position
LG 17:19305162..19311987
Genome browser
AA seq
145 aa
AA seq
DB search
MLPLSLLKTSQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKNRTDRKPPGVGRGRGRGRDDGGGRRQPRGMGRGMDE
GGGRGRSQGGYGGNPSNRGGGRGRG
NT seq
438 nt
NT seq
+upstream
nt +downstream
nt
atgcttccattatctctgcttaagacgtcacaaggacatcctatgctggtggagctgaaa
aatggtgaaacttacaatgggcatctggtgaactgtgacacctggatgaatatacatctt
cgcgaagtgatttgtacctcaaaagatggtgataggttctggaggatgcctgaatgctac
atccgtggaaacactataaagtatcttcgtgtgccagatgaggtgattgacaaggttcag
gaagaaaccaagaaccgtaccgatagaaagccacctggggtagggcgtggaaggggaaga
ggtagggatgatggtggtggtagaaggcaaccaagaggcatggggcgtggcatggatgaa
ggaggtggtagagggaggagccaaggaggctatggaggcaatcccagcaacagaggtgga
ggccgtggtcgtggatga
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integrated database retrieval system
