Cynara cardunculus var. scolymus (artichoke): 112500612
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Entry
112500612 CDS
T05604
Name
(RefSeq) partner of Y14 and mago-like isoform X1
KO
K14294
partner of Y14 and mago
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03013
Nucleocytoplasmic transport
ccav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112500612
03015 mRNA surveillance pathway
112500612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112500612
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
112500612
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mago-bind
Snx8_BAR_dom
SAT
Motif
Other DBs
NCBI-GeneID:
112500612
NCBI-ProteinID:
XP_024959896
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Position
LG 17:7944714..7952952
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AA seq
227 aa
AA seq
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MASSGAANERGGGEEEEAKELAAQLSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQD
EVAIYKSKGALLKKEMESLETVPPGYDPEVDVVSKPKSKSAKRNERKKEKRLQQASLDKG
KSEVSSTEDVDRASEPVESIVFQMNEITISGNPSVATPPLNSTECLATEDHIPDIDKRIR
ALKKKIRLTEAKTGNELKPEQLEKVGKLEDWRKELKLLEDKKASFHD
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcagtggtgccgctaatgaacgtggcggaggagaagaagaggaagccaaagaa
ctggctgcacagcttagcaaaaccctaaaagaaggagaaagaatccttgcccccacacga
agacccgacggaaccctacgcaaacccattcgcattagagctggttacgttcctcaagat
gaagtcgccatttacaaatctaaaggtgccctgttgaagaaggaaatggagtcgctggaa
acagtgccccctggttatgatcctgaagtggatgttgttagtaaacctaagagcaaatcg
gccaagaggaatgaaagaaagaaggaaaagcgtttgcagcaggcttccctcgataagggc
aaaagtgaagtttcatctactgaagatgttgatcgagcatcagaacctgttgaatccatt
gttttccagatgaacgagatcactatttctggaaacccttccgttgctacccctcctttg
aattcaacagaatgtttagctacggaagatcatattcctgacattgataaaagaatccgg
gccctaaaaaagaagatccggctgacggaggcaaaaacggggaacgaattgaaaccggaa
caattggagaaggtaggtaaattggaggattggagaaaagagttgaagcttttggaggac
aaaaaggcttctttccatgattaa
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