Cynara cardunculus var. scolymus (artichoke): 112500846
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Entry
112500846 CDS
T05604
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
KO
K14411
RNA-binding protein Musashi
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112500846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112500846
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
112500846
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Nup35_RRM_2
Duc1_FFAT_like
Motif
Other DBs
NCBI-GeneID:
112500846
NCBI-ProteinID:
XP_024960209
LinkDB
All DBs
Position
LG 17:3586091..3589830
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AA seq
479 aa
AA seq
DB search
MQSDLGKLFIGGISWDTNEERLQEYFSSYGEVLEAVIMKDHTTGRARGFGFVVFADPAVA
ERVIKEKHNIDGRMVEAKKAVPRDDQSTISRNSNSIQGSPVAGRTRKIFVGGLASTVTEN
DFKRYFEQFGNITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR
AVPKELSPSPSRTMVGAYPYGLGRTSGFLNGYTQGSYSPSVVGGYGVRMDGRFSPVPAGR
SGFATFGSGYGMGLNFEPNMSSPNYNRALSYGRGMSPYFVGTSNRFTGPINFDGGNGGNT
SFFSSTPRNLWGNGGFNYGSNSAGSSGYVGSGSGVIGGGLFGNSSLNWGSSPIANQGGGI
GNSSTQSGNLGYGGGDNSYGLGGGSGYGRNVATSGGAAANGGGGGYEGPFSDFYSGASGS
SVYGGDPTWRSGNSEQEGSGSFGGYGIGGDGSDVQTKSSPGYVGAYTVAKRHTNRGIAG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcggatcttggtaagttattcatcggtgggatatcatgggatacgaacgaagaa
cgcttacaggagtatttcagtagttatggtgaggtgttggaagctgttattatgaaagat
cacaccactggccgtgctcgtggtttcggtttcgttgtctttgcggatcctgctgttgcc
gaaagagtcatcaaagagaagcacaacatcgatggccgaatggtcgaggctaagaaggct
gttcctcgagatgatcaaagcacaatcagtagaaacagcaatagcattcagggatctcca
gttgcaggccgaacaagaaagatattcgtaggaggtttagcatccaccgtcaccgagaat
gatttcaagaggtattttgagcaatttggtaatattacagatgtcgtagttatgtatgat
cataatacacaaaggccaagaggatttggattcattacttatgattcagaagaagccgta
gataaagtcctcttgaaaactttccatgaactgaacggtaaaatggttgaagttaaacgt
gctgtcccaaaagaactttcacccagtcctagccgaaccatggttggtgcgtacccctat
ggtctgggtcgaaccagtggctttcttaatggctacactcaaggatcctactctcctagt
gtggttggaggttatggtgttagaatggatggcaggttcagtccggttccggctggtaga
agtgggttcgctacttttggttctggttacggaatgggattaaactttgaaccaaatatg
agcagccctaactataatcgggctttaagctacggaaggggaatgagtccttattttgta
gggacttcaaatcggttcacgggtcctataaattttgatggtgggaatggagggaatact
tctttcttcagttcgactccgaggaacttatggggtaatggcgggtttaactatggatca
aattcagcgggatctagtggttatgttggatcaggaagtggggttatcggcggggggtta
tttgggaattctagtctcaattggggttcttctccaattgcaaatcaaggtggcgggatt
gggaactcttctacgcagagtgggaatcttggttacggaggaggtgataacagttatggt
ttaggaggcggcagtgggtatggtagaaacgttgcgactagtggtggtgccgctgctaac
ggtggtggtggcggctatgaagggcctttttctgacttttatagtggtgctagcggcagc
tctgtttatggcggagacccaacttggcggtcgggaaatagtgagcaagaggggtctggt
tcgtttggcgggtatgggattggcggtgacggttctgatgtgcaaactaaaagttctcct
ggttatgttggtgcttataccgttgccaagcgacacacaaacagaggaattgctggctag
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