Cynara cardunculus var. scolymus (artichoke): 112501021
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Entry
112501021 CDS
T05604
Name
(RefSeq) protein RAE1-like
KO
K14298
mRNA export factor
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112501021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112501021
03036 Chromosome and associated proteins [BR:
ccav03036
]
112501021
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112501021
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
112501021
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
NBCH_WD40
Nup160
Gmad1
NUP214
Motif
Other DBs
NCBI-GeneID:
112501021
NCBI-ProteinID:
XP_024960422
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All DBs
Position
LG 17:7019110..7028167
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AA seq
349 aa
AA seq
DB search
MSTFGMGSASNTNPNKSTEVVSSPTDAVSSLCFSPKANYLVATSWDNQVRCWEVTKNGTS
VSTVAKTSMAHEHPVLCSAWKDDGSTVFSGGCDKQVKMWPLLSGGQPVTVAMHDSPVTQV
AWISEMNLLVSGSWDKTLRYWDLRQSNPVHTQQLPDRCYALTVRHPLMVVATADRNLIAF
NLQNPQAEFKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDEQQQSKNFTFKCH
REGNDIYSVNSLNFHPVHQTFATAGSDGAFNFWDKDSKQRLKAMSRCNQAIPCSSFNNDG
SIYAYAVCYDWSKGAENHNPATAKTCIYLHLPQESEVKGKPRAGTVGRK
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgtctacatttggcatgggttctgcttcaaatacgaacccaaacaagtccactgaggtt
gtatcatctcccactgatgctgtatcaagcctttgtttcagtcccaaggcgaattacctc
gttgcaacttcatgggataaccaggtgagatgctgggaagtaacaaaaaatggaacttct
gttagcactgtggcaaagacatctatggctcatgagcatccggttctgtgttcagcgtgg
aaggatgatggatcaacagtcttctctggaggctgtgacaagcaagtgaagatgtggccg
ttactgtctggcggccaacctgtaacggtggcaatgcacgatagcccggtgactcaggtt
gcttggatttcagagatgaaccttttggtttcaggaagctgggataaaactttaaggtac
tgggacttgagacaatcgaatccagtccacactcagcaacttcctgatcgttgctatgca
cttacagtgagacatcccctgatggttgttgccactgcagatagaaatcttatagcattc
aacttgcaaaaccctcaggcagagtttaaaagaatcgtttcccccttgaagtaccaaact
aggtgtgttgctgcctttcctgatcagcaaggtttcttggttgggtcgattgaaggaagg
gttggtgtgcatcatcttgatgaacaacaacaaagtaaaaatttcacatttaaatgccac
agagagggaaatgacatctactccgtcaattctcttaactttcatcctgttcatcagacg
tttgcaactgcaggatcggatggtgcttttaacttctgggacaaagatagcaaacaaaga
ttgaaggcaatgtcgaggtgcaatcaagctataccctgcagtagctttaacaacgatggc
tccatatacgcttacgcggtatgttatgattggagcaaaggtgccgaaaatcacaatcca
gcaacagcaaaaacctgcatttacttgcacttgcctcaggaatcggaggttaaaggcaag
cctcgtgctgggaccgttggaaggaaatga
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