Cynara cardunculus var. scolymus (artichoke): 112501052
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Entry
112501052 CDS
T05604
Name
(RefSeq) DNA mismatch repair protein MSH7
KO
K08737
DNA mismatch repair protein MSH6
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
112501052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112501052
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
112501052
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
112501052
NCBI-ProteinID:
XP_024960463
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Position
LG_17
Genome browser
AA seq
1128 aa
AA seq
DB search
MKRQKSILSFLQRPSTMPENEKPVGCGAPKGHSVVVSEEKLQHRNVAASNQPVVLSSTTV
GISDEVRGTDTPPEKEQRPFFQSKSIARGDNGEHNRSGHSMFSSIKHKFVKPNNVKKPCD
RNLSGGSHDIIYPLSNKYSYSNGRDKESSVSSSPVMKSVLDVEKTAFPGDKRHPLLVESD
GDITGPETPGTRXLVPRLKRVQEDGCNFASTTTTTTTTQSFMDNSKRVKFSHDLLAEKKK
DEVASESASKFDWJHPSXIKDANGRRPDNPLYDKRTLYIPPDVLRNMSASQKQYWSVKSQ
YMDVLIFFKVGKFYELYELDAEIGHKELDWKMTMSGVGKCRQVGITENAIDDAIEKLLAR
RYKVGRVEQLETAAQAKSRGATSVIQRKLVHVLTPSTLMHGNIGPQAVHLLALKEGIRGT
DDGSIAYGFAFVDCAALQFWVGSISDDASYAALGALLMQVSPSEVIFESQGLSKEAQKAL
NKYSLMGSVASQMTPAQSATDFVDSSEVRHVIQMKGYFKGSSNAWDCALDGVVHQDAALC
ALGGLTSHLSRLKLDDALRNGSIRPYEVYKGCLRMDGQTMANLEIFNNNVDGGTSGTLYK
YLDNCITSSGKRLLRKWLCHPLKDAEEINHRLNVVEELMAHAEIMALITQYLRKLPDLER
FLGQIRATFKSSALILLPLIGSKILKQRVKVFGSLVKGLRAGMDLLMLLQKDNPVFSLLL
KIFTIPMLSGSDGLDKFLNQFEAAIDSDFPNYQAPELKDSDAEILSILIELFMEKANEWF
QVILALNCIDVLRSFAVTANFSSMAMSRPFIVPRSDSSGFNQGSKGPTLHIRGLCHPYAL
GESGGMPVPNDLCLGDGECGYNPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCYVPCEM
CALSPVDIIFTRLGATDRIMSGESTFLVECTETASVLQNASQDSLVILDELGRGTSTFDG
YAIAYAVFRHLVEKVNCRLLFATHYHPLTKEFAAHPHVTLQHMACTFEPVSDNSSSTTQK
LVFLYRLTTGACPESYGMQVALMAGIPKRVVEAASKAAEVMKTKIGVSFRSSERRSEFST
LHEEWLRTVLTVAKVEDDKVEEDGYEDDVFDTLFCLWHELKCSNQKVR
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgccagaaatctatattatcgttccttcagagaccgtcgacgatgccggaaaat
gagaaaccggtaggctgtggagctccaaaaggccactccgtggtggtttctgaggagaag
ctacaacatagaaatgtagccgcatctaatcagcctgttgttctctcatctacgacggta
ggaatctctgacgaagtgagaggaaccgacactccgccagagaaagaacaacgcccattc
tttcagtcgaagtcgattgcccgcggtgacaacggcgaacacaacaggagtggacactct
atgttttccagtattaagcacaagttcgtgaagcctaacaacgttaagaagccttgtgac
cggaatttatcaggtggcagccatgatattatttacccattatctaataaatatagttac
tcaaatggaagagacaaggagagttcggtttctagttctccggtaatgaaaagtgttttg
gatgtagaaaaaactgcttttccaggggataaaagacatcccttgcttgtagaatctgat
ggggatataacagggccagaaactcctggtactcgaycactggttccacgtttgaagcga
gttcaagaggatggttgtaactttgcctctactacgactactactactactactcaatct
tttatggacaatagcaaaagagtgaagttttctcatgatttactggctgaaaaaaagaaa
gacgaagtggcatctgaatcggctagtaaatttgattggmttcatccttcayaaattaaa
gatgctaatggaagaaggccagacaatcctctttatgacaagagaacactttatatacca
cctgatgttttgaggaatatgtcagcatctcagaaacagtattggagtgttaaaagtcaa
tacatggatgtccttattttctttaaagtgggaaaattctacgagctttatgaattagat
gctgaaattggacataaagagcttgactggaaaatgacgatgagtggtgttgggaaatgc
cgacaggttgggatcaccgagaatgcaattgatgatgctattgaaaagctgctggctcgt
aggtataaagttgggcgagtggagcagttggaaacagcagcacaggcaaaatcgagaggc
gctacttctgtaattcaaagaaaattagtacatgtgcttacaccatcaaccttgatgcat
ggtaacattgggcctcaagctgttcatcttcttgctctaaaggagggtatacgtggtact
gatgatggttcaattgcatatggatttgcctttgttgattgtgccgcgttacagttttgg
gttggatccatcagtgatgatgcttcctatgcagctttaggggctttattgatgcaggtg
tcaccttcagaagttatttttgaaagtcaagggttgtctaaagaagctcagaaagccctt
aacaagtattcattgatgggttctgttgcctcacaaatgactccagcacagtcggcgacc
gattttgttgattcctctgaagttcgacatgttatccaaatgaaaggttactttaaaggt
tcctctaatgcatgggattgtgcactcgatggagtggttcaccaggatgctgcgttatgt
gctcttggtggacttaccagtcatttatccaggttaaagttagatgatgcattacggaat
ggaagtattcgaccgtatgaagtctacaaaggatgtcttagaatggatggacaaacaatg
gccaatcttgaaatattcaacaataatgtagatggtggaacatcaggaactctgtacaaa
tatcttgataactgcataacatcatctggtaagcggctcttaaggaagtggctatgtcat
ccactgaaagatgctgaggaaatcaatcataggcttaatgtggttgaagaactgatggca
catgcagagattatggcactaattactcaatatcttcgaaaacttccagacttagagagg
tttcttggacaaattagagctacttttaagtcatctgctttaattctattgcccttgatt
ggcagcaaaatattgaagcaacgagtgaaagtgtttggatctcttgttaaaggtctacgt
gctggaatggatttattaatgctcttacaaaaggataatcccgtcttctcattgttattg
aaaatatttactattccgatgctaagtgggagtgatggccttgataaatttcttaatcaa
ttcgaagcagctatagacagtgatttcccaaattatcaggcacctgagcttaaggattcg
gatgctgaaatactatcaattctgatcgagttattcatggagaaggctaatgagtggttt
caggtcatcctggctttaaactgtatagacgtgcttagatcttttgctgtcactgcaaat
ttctctagcatggccatgtctaggccctttatcgttcctaggtcagactcatcgggtttt
aaccaagggtccaagggacccacacttcatataagaggattatgtcatccatatgcgctt
ggagagagtggaggaatgcctgttcccaatgacttgtgtcttggagatggtgaatgtgga
tacaatcctcgcactttgctgttgactggaccaaatatgggcggaaagtctacccttctt
cgtgctacctgtttagctgttatacttgctcagctgggttgttatgttccttgtgaaatg
tgcgctctctcgcccgtggatattatttttacacgccttggtgcaactgatcgtataatg
tccggtgaaagtacctttctcgtcgaatgcacagaaacagcatcggttttgcaaaatgca
tctcaagattccctcgtcatacttgacgaattgggccgaggaaccagcactttcgatgga
tatgctattgcttatgctgtgttccgtcatcttgtcgagaaggtcaattgccggttatta
ttcgcgacccattaccatccgctcacaaaggagtttgcagcacaccctcatgtcacctta
caacacatggcctgcaccttcgaacccgtgtccgataactcatcgtcaaccacccagaag
ttggtgtttctctaccgtctaaccaccggtgcctgccccgagagctacggaatgcaagtg
gctttaatggctggtatcccaaaacgggtggtggaagccgcctcgaaggcagcggaggtt
atgaaaacaaagatcggagtaagtttccggtcaagcgaacgtcggtcggagttttcgacg
ttgcatgaggagtggttaaggactgttttaacagtggcaaaagttgaagatgataaggtt
gaggaagatggttatgaagatgatgtgtttgatacattgttctgtttgtggcatgagctt
aaatgctcaaatcaaaaggtgaggtaa
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