Cynara cardunculus var. scolymus (artichoke): 112501076
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Entry
112501076 CDS
T05604
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3-like
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03020
RNA polymerase
ccav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112501076
09124 Replication and repair
03420 Nucleotide excision repair
112501076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112501076
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112501076
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
112501076
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
112501076
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Motif
Other DBs
NCBI-GeneID:
112501076
NCBI-ProteinID:
XP_024960496
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All DBs
Position
LG_17
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AA seq
320 aa
AA seq
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MEGASYQRFPKVKIRELKDDYAKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCINDQTLDV
TSKDLYSSDHTVVPVDFSDTGAGFENNEDQRGITIVKLRKGQELRLRAIARKGIGKDHAK
WSPAATVTFMYEPEIHVNEEMMETLSLEEKTSVVESSPTKVFGINPHTQQVEVVDREAYT
YDDEVLKKVEAMGKPGLVEIYAKEDSFIFTVESTGAVKASQLVLNAIEVLKQKLDAVRLS
EDTVEADDQFGELGAHMRGG
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atggagggggcatcataccagaggttccccaaggtcaaaatccgtgagctcaaagatgac
tacgccaaattcgagctccgggaaaccgacgccagcatggccaatgcgctccgccgcgtc
atgattgcggaggttccgaccatcgccatcgaccttgttgaaatcgaggtcaactcttct
gttcttaatgatgagttcattgcacatcgtcttggccttatccctctaacaagcgagcgc
gccatgagcatgcggttctcacgtgactgcgatgcctgtgacggtgacggtcagtgtgag
ttttgttctgttgagtttcatctgagagccaagtgtataaatgatcaaaccctagatgtt
accagtaaagatctctatagctctgaccacactgttgtgcctgtcgacttctccgatacc
ggtgccggctttgaaaataatgaagatcagaggggaataacaattgtgaaactgcgcaaa
gggcaagaactgaggctaagagcaatagctcgaaagggaattggaaaagatcatgccaag
tggtcacctgctgcaaccgtcactttcatgtatgaacctgagattcatgttaatgaagaa
atgatggagacattatcacttgaggagaaaacaagtgttgtggagagcagccctaccaaa
gtctttggcataaacccccatacccagcaggtggaggtggtagatcgtgaggcatacaca
tacgatgatgaagtgctgaagaaagtggaagcgatggggaaaccaggacttgtggaaatc
tacgcaaaagaagacagtttcatcttcacggtcgagtccacgggtgcagtgaaagcctct
cagttggtgcttaatgcaattgaagtactgaaacagaagctggatgcagttcggctgtct
gaggacaccgtagaagctgatgaccaatttggtgaattaggtgctcatatgcgaggagga
tga
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