Cynara cardunculus var. scolymus (artichoke): 112501192
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Entry
112501192 CDS
T05604
Name
(RefSeq) vacuolar protein-sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
112501192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccav04131
]
112501192
Membrane trafficking [BR:
ccav04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
112501192
Hops complex
112501192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS11_N
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_C
Clathrin
TPR_Vps41
zf-C3H2C3
zf-C3HC4_2
zf_RING_Vps8_fungal
OCRL_clath_bd
zf-RING_5
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
112501192
NCBI-ProteinID:
XP_024960643
LinkDB
All DBs
Position
LG 17:complement(3544255..3550063)
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AA seq
961 aa
AA seq
DB search
MYQWRKFEFFEEKYAGKCLVPDEVAGKIECCSSGRGKIVVGCEDGTVSLLDRGFKFSYGF
QAHTSSVLFLQQLKQRNFLLTVGEDEQISPQLSSVCLKVFDLDKTQPEGPSTSIPDCIQI
LRIFTNQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIQGDIARERIKRFMLQVENRQ
DKTQCAITGMGFRVDGKAFQLFAVTPGSVSLFNLQTQPASRQTLDQIGCNVNSVAMNDRL
ELIIGRPEAVYFYEVDGRGPCWAFEGEKKFLGWFRGYLLCVIADQRSGTNTFNIFDLKNR
LIAHSIVGKEVSHMLCEWGSILLIMSDKSAICIGEKDMESKLDMLFKKNLYTVAINLVQS
QQADAAATAEVLRKYGDHLYSKQDFDEAMAQYIHTIGHLEPSYVIQKFLDAQRIYNLTNY
LEKLHEKGLASKDHTTLLLNCYTKLKDVDKLNIFIKSEDGVGEHKFDVETAIRVCRAANY
HEHAMYVAKKSGRHEWYLKILLEDLGRYEEALQYISSLEPSQAGVTVKEYGKILIEHKPT
ETIKILMGLCTEEGETSNRGTSNGSYAYMLPSPVDFLNIFIHHPRSLMIFLEKYIKKVKD
SPAQVEIHNTLLELYLSSDLNFPLMSLSNIVENGTSKPESSLGIASTSRAESNGKLPPEH
KDVNTEKDHQERLQKGLVLLKSAWPSDQEQPLYDVDLAIILCEMNAFKEGLLYLYEKLKL
YKEVITCYMRSHDHEGLIACCKKLGDSGKGGDPSLWADLLKYFGELGEECSKEVREVLTY
IERDDILPPIMVLQTLSSNPCLTLSVIKDYIARKLEHESKLIEEDRRMIDKYQEETTTMR
KEIQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHQRCLGDNEKECPECAPEYRSV
LEMKRSLEQNSKSQDQFFHQVKNSKDGFSVIAEYFGKGIISKNSKGQAGSLNSTSTSTDD
F
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atgtatcaatggaggaaattcgagttcttcgaggagaaatacgccggaaaatgtttggtc
ccggatgaagtcgctggaaaaattgagtgttgttctagcggaagggggaagatcgtggtg
ggatgtgaagacgggactgttagtttactggatcgaggttttaagttcagctatggattc
caagctcacacttcctctgttctattccttcaacaactcaagcaacgcaacttcctacta
actgtgggagaagatgaacaaatatctccacagttatcatctgtgtgcctcaaggttttt
gaccttgataaaactcaaccagaagggccaagcacatcaattccggattgtatccagata
ttgcggatattcaccaatcagttcccagaagcaaagataacatcatttctagttctagag
gaagctccaccaatattgctaatagctattggactagacaatggttgcatttattgcatc
caaggggatattgcacgtgagcgtatcaaacgtttcatgcttcaagtggagaatcgccaa
gataaaacccaatgcgctattaccggaatggggtttcgtgttgatgggaaagcgtttcag
ttatttgcggttactccaggttctgtaagcttgtttaacttgcagactcagccagctagc
cgacaaaccctcgatcagataggatgcaatgtgaatagcgttgcaatgaatgaccgcttg
gagctgatcattggtcgacccgaggctgtatatttctatgaagttgatggtagaggtcct
tgttgggcttttgaaggggaaaagaagttccttgggtggtttcgtggatacctgttgtgt
gttattgcggaccaaagaagtggcaccaacacattcaatatctttgacctgaaaaaccgt
ttaattgcacacagtatagtgggtaaagaagtttctcacatgctatgtgaatggggaagc
atactgctaataatgagtgacaaatcagctatatgcattggagagaaggatatggaaagc
aagttggatatgctttttaaaaagaatctttacactgtagccatcaatcttgttcagagt
caacaagctgatgcagctgcaactgctgaagtgctaaggaagtatggcgatcatttgtac
agcaagcaagactttgatgaggctatggctcagtacattcataccatcggtcaccttgaa
ccttcatatgtgatacagaagtttcttgatgcacagaggatttacaatcttaccaattac
ttggagaagttacatgagaaaggtcttgcttctaaagatcacacaacgcttctcttaaac
tgttataccaaactgaaagatgtggacaagctgaacatcttcatcaaaagcgaggatggc
gtcggggagcataaatttgacgtggaaactgcaataagggtttgtcgagctgctaattat
catgagcatgcaatgtacgtcgccaagaagtctgggaggcatgagtggtacttaaagatt
ttgcttgaagacttgggaagatatgaagaggcattgcagtatatttctagccttgaacca
agtcaagctggggtgacggtgaaagaatatggtaaaatacttatagagcacaaacccact
gaaactatcaaaattctcatgggcctttgcaccgaggaaggagagacatcaaacagaggg
acttcgaatggttcatatgcatatatgttgccgtcacctgttgattttctcaacatcttt
attcatcatccaagatcacttatgatttttcttgaaaagtacataaagaaagtaaaagat
tcaccagctcaagtagaaattcacaacacattattggagctatatttgtctagtgacttg
aacttcccattaatgtcactatctaatattgttgagaacggtacttccaaaccagagagt
tcactgggaatagcttctacgtcaagagccgaatcaaatgggaaattacctcctgaacat
aaagatgtaaacacggaaaaggatcatcaggaaagacttcagaaagggcttgtattgctc
aagagtgcatggccatccgaccaagaacaaccgctatatgatgttgatctggctataatt
ctctgtgaaatgaatgcttttaaagaaggccttctatatctttatgagaagttgaaactc
tataaagaggtgattacttgttacatgcgctcacatgaccatgaggggctgattgcctgc
tgtaagaaactaggggactcagggaagggaggtgacccttctctgtgggcagatctattg
aagtactttggtgaacttggggaagagtgctccaaagaagtgcgggaagtcctgacttat
attgaaagagatgatattttgcctcctatcatggttttgcagacactttcctcaaatcca
tgtctcactctctctgtcatcaaagattacatagctaggaaactggaacatgaatccaag
cttattgaagaggaccgtcgcatgattgataagtaccaggaagaaacaacaacaatgaga
aaagaaatccaagatctcaggactaatgcccgaatctttcagctaagcaagtgtactgct
tgcactttcacccttgaccttcctgctgtccactttatgtgtatgcattctttccatcaa
cgttgccttggtgacaacgaaaaagaatgtcctgaatgcgcccctgaatacagatccgtt
ctagaaatgaaaagaagcttggagcaaaactccaagagccaagatcaattcttccatcaa
gttaagaattcaaaagacgggttttccgtgattgctgaatattttggaaaagggattatt
agcaaaaacagcaaaggacaagctggatctctgaactcaacctctacttccaccgatgac
ttctga
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