Cynara cardunculus var. scolymus (artichoke): 112501219
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Entry
112501219 CDS
T05604
Name
(RefSeq) uncharacterized protein LOC112501219
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015
mRNA surveillance pathway
ccav03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112501219
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
112501219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112501219
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
112501219
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
Motif
Other DBs
NCBI-GeneID:
112501219
NCBI-ProteinID:
XP_024960685
LinkDB
All DBs
Position
LG 17
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AA seq
727 aa
AA seq
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MDQNESHGGGDANEQFHQNEAISAVVDEGFLGEDDDDYEDLYNDVNVGEGFLQSLRKNED
LGFKNEEEVEKNKSEPVPQPVQHPQAVDDGAVGGGGESKFESNDGVSSRVEANSNVGLGV
NEMGGMGSGGPVGGGLRVELGQSLAKVGEVESRTVSNNGMPNIGMGQQQPHHVGTVGSTG
NMGSLGNAGGDSLVGQGSGNVNGSGGNVFGNGGGGGGMSMGGGGGGGVGGGGAGGGTILF
VGDLHWWTTDAELELELCKYGHVKEVKFFDEKASGKSKGYCQVEFYDPSAATSCKEGMNG
HVFNGRPCVVAYASPYSVKRMGEAQVNRNQQMAQSSVSQAKRGPGDAPAKPAGNNMSAGG
NFQGSGGNYQGGGDNRGFGRGNWGRGNAQGMGGRGPGRGGGMGGRGGMGGRGMMGNGGNA
FGQGMGGPPPMLHPQSMMGQGFDPSFGGPMGRMGSYGGFPGGPTPPFSGMLPSFPPVGNV
GLPGLAPHVNPAFFGRGMPMNGMGMMPTGGVDGPNMGMWSDPNMPGWAGDEHGGRVGESS
YGEEAVSDQQYGEGSHDRGAWPNAAKEKDRGVERDWSGTSDRRIRDDREPGYERDVPREK
DAVHEEEWPERRHRDEREGGRDRERDRDRDRDRERDRERSRDRERERSRDRERDRDRERG
RDRHRDERDRYADHHKYREVEPEYDDEWDRGRSSRTHGKSRLSQEDEQRSTRSRDAEYGK
RRRVTAE
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaacgaatcccatggcggtggagatgcaaacgagcaattccatcagaacgaa
gctatttctgcggttgtcgatgagggttttctaggggaagatgatgatgattacgaagat
ctttataacgatgttaatgttggcgagggttttcttcaatctcttcggaagaacgaggat
ttagggtttaagaacgaggaagaagttgagaagaataagtcggagccggtacctcagccg
gtgcagcatccacaagcggtggatgatggcgctgttggaggtggtggtgagagcaagttt
gagagcaacgatggtgtttctagtagagtagaggcgaattcgaatgttgggttaggagta
aatgaaatgggagggatgggatctggtggaccagtgggtggtgggcttagagttgaatta
gggcagtccttggctaaagtaggtgaagtagaaagtcggactgtgagtaacaacggcatg
ccgaacatagggatgggacaacaacagcctcatcatgttgggactgtggggagtacagga
aatatggggagtttagggaatgctggtggtgatagtttagttggacaaggcagtgggaac
gtcaatggttccggaggaaatgtttttggtaatggtggtggtggtgggggaatgagcatg
ggtggtggaggtggcggcggtgttggtggtgggggtgcaggtggaggaacaattctcttt
gtgggagatttacattggtggacaactgatgctgagcttgagttggaactttgcaagtat
gggcatgtgaaggaggtgaaattctttgatgagaaggctagcggaaaatcaaaaggttac
tgccaagttgagttttatgatccttctgctgctacatcttgcaaggagggaatgaatggg
catgtgttcaatggtcgtccctgtgttgttgcatatgcttcaccttatagcgtaaaaaga
atgggagaagcacaggtgaatagaaaccagcaaatggctcagtcttccgtgtctcaagcc
aagaggggccctggagatgctcctgctaaaccagcgggtaacaatatgtctgctggtggg
aatttccaaggtagtggtgggaattatcaaggtgggggcgacaacagagggtttggaaga
ggaaactggggtagaggtaatgctcaagggatgggaggtcgggggccaggtaggggtggt
ggaatgggtggacgtggtgggatgggcgggcgtggtatgatggggaatggtggaaatgca
ttcggccagggtatgggtggaccgccacctatgttgcatccccagtcgatgatgggtcag
gggtttgatccttcttttggaggcccaatgggccgaatgggaagttatggaggttttcct
ggtggtccaacgccacccttttcaggtatgctgccttcctttccgcctgtcggtaatgta
ggcttgcctggattggctccacatgtgaacccggcgttttttgggagagggatgcccatg
aatgggatgggtatgatgccaacaggtggtgttgatggacccaacatgggaatgtggtca
gatcctaatatgcctggatgggctggtgatgagcatggtggcagagtaggggagtccagt
tacggagaagaagccgtgtctgatcagcaatatggagaaggtagccatgatagaggagct
tggccgaatgctgcaaaggaaaaagatagaggggtagagagggactggtctgggacttct
gatagaagaattagagatgatagagaacctgggtatgagagggatgtgccaagagaaaaa
gatgcggttcatgaagaagagtggcctgaaagaaggcatcgagatgagagggaaggtgga
agagatcgagaaagggaccgggaccgggaccgggaccgtgagcgtgatcgtgaaagatct
cgtgaccgcgaacgtgaaagatctcgagatcgtgagcgtgatcgtgacagggaacgtggc
agggaccgtcatagggatgaaagggacagatatgctgatcatcacaaatatagggaagtt
gaaccagaatatgatgatgagtgggatcgggggcggtcatcacgaacccatggaaaatca
agattgtctcaagaggatgagcaaaggtctactagatctagggatgccgaatatgggaag
aggcggcgtgtaactgcagaataa
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