Cynara cardunculus var. scolymus (artichoke): 112501294
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Entry
112501294 CDS
T05604
Name
(RefSeq) pentatricopeptide repeat-containing protein At4g30700
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PPR_2
PPR
DYW_deaminase
PPR_1
PPR_3
E_motif
PPR_long
TPR_19
Plant_NMP1
SNN_transmemb
Motif
Other DBs
NCBI-GeneID:
112501294
NCBI-ProteinID:
XP_024960774
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Position
LG 17:complement(34353835..34361030)
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AA seq
785 aa
AA seq
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MICRALAKRDRNFFLNLITKATNQSHLRQTHAQIILNGLNTDLATVTKLVQKLSDLAAIS
DATLICSNFPNPDLFLYNVIIRGFSRNNNHSNSLFIYRQLRENTALKPDNFTYAFVISAA
SKLLRNKVGLSLHGHAIVGGAGLDLFVGSAIVDMYLNFGKVGYAYKVFDGIPEPDTVLCN
TMISGSVKNGCFDESIQVFKNMILRGTPFDSTTFAATLTAAAELQELKVGMAIECLSIKL
GFHWHAHVLTGLISLYAKCGDMSTGERLFEQIKHPDIIAYNAMISGFNCNQEMESAIALF
RELLVSHQRVNSSTMVGLIPVFHPFRHLILSSIIHCFCLKYGLISKTSVATALVTVYSRL
NEIDPARKLFDESSDKSLAAWNAMISGYAQNGVTDKAIALFQEMQKLNIPPNPTTITSIL
SACAQLGALSLGKWVHDLASKENFKSNIYVSTALIDMYAKCGSIEEARQVFDTMPEKNAV
TWNAMISGYGLHGHAHEALQIFDKMVDSKVPLSGVSFVSVLYACSHAGLVKEGEEIFYAM
VQDHGFEPLSEHYACMVDLLGRAGELQKALDFIKKMPIEPGPAIWGALLSACKTHKNTEL
ARLASDKLFELDPENVGYHVLLSNIHTADKNYDEAASVRQVVKNRNLAKTPGCTLIEIDK
IPHVFTSGQRSHQKTEAIYGKLEKLMGKMREAGYQTDTMTALHDVEEEEKELMVKVHSEK
LAIAYGLMNTKRGSEIRIIKNLRVCIDCHNFTKFISKITERVIVVRDANRFHHFKDGQCS
CGDYW
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgatttgcagagccttagcaaagcgtgatcggaacttcttcctaaacttgatcaccaaa
gccaccaatcaatcccatcttcgccaaacccacgcccaaatcatcctcaatggtctaaat
actgacttagccaccgtcacaaagctcgttcaaaaactctccgacctcgccgccatctcc
gatgcaaccctcatatgttccaactttcccaaccctgatctttttctctacaatgttata
atcagaggattttctcgtaacaataaccactcgaattctctgttcatctaccgccaactg
cgtgaaaacactgctcttaagccagataattttacttatgcattcgttatttctgctgca
tcgaagcttttgcgtaataaagtaggcttgtctctgcatgggcatgccattgttggtgga
gctggattggatttatttgttgggtctgccatagtcgatatgtatttgaattttggtaag
gtggggtacgcatacaaggtgtttgatggaattcctgaaccagatactgttctgtgtaat
actatgatatcagggtcagttaagaacggttgctttgacgagtcgatacaagtttttaaa
aacatgattttgagaggaactccattcgattccaccacttttgccgctactcttacggct
gctgcagagttgcaagagttgaaagttggaatggcaatcgagtgtttgtcgattaagctt
ggatttcattggcatgctcatgttcttacgggtcttatatcattatatgcaaaatgtggg
gatatgtcaacaggagaacgtttgtttgagcagatcaaacacccggatataatagcttac
aatgctatgatttctgggttcaattgtaaccaagaaatggagtccgctattgccctcttt
agagagttgttagtttcgcatcagagagtcaattcaagtactatggttggtttgatccct
gtgtttcatccctttcgtcatttgattctttcaagtataatccattgtttttgtttgaaa
tacggtttgatttcgaaaacttcagttgcaaccgcattggtaacagtctacagtcgactt
aatgagattgatccagcaagaaagctatttgatgaatcctcagataaaagcttagcagct
tggaatgcaatgatttctggttatgctcaaaatggagtaacagataaggcaattgcgctc
ttccaagagatgcagaaactcaacatacctccaaatcctacaacgatcaccagtattctt
tcggcatgtgctcagcttggtgctctaagtctaggaaaatgggttcatgatttagcaagc
aaggagaactttaagtccaatatatacgtttcaactgccttaattgatatgtatgccaaa
tgtggaagcatagaagaggctcgtcaagtatttgacaccatgcctgaaaagaatgcagtg
acatggaacgctatgatctctggttatggtctccatggccatgctcatgaggcactccag
atttttgacaaaatggtggattcaaaagtacccttaagcggggttagtttcgtttctgta
ttatatgcttgtagccatgctggattggtgaaagaaggagaagagattttctatgcaatg
gtccaagatcatgggttcgaacccttatccgagcattacgcttgtatggttgaccttctt
ggtcgagctggagaactacaaaaagctttggactttatcaagaaaatgcccatcgagcca
ggtccagccatatggggtgcacttcttagcgcctgcaagactcacaagaacaccgaacta
gcacgactagcatcagataagttgtttgaattggatccagaaaatgtaggttatcatgtc
ttactctccaacatacacactgctgataaaaactatgatgaggctgcttcagttagacag
gtggtcaagaatcgaaatcttgcaaagactcccggatgcactctaatagaaatcgacaaa
atcccacatgtattcacatctggacaacgatcccaccaaaaaacagaagcaatttatggg
aagctggagaaattgatgggtaagatgagggaagctggatatcagacagatactatgaca
gcattgcatgatgttgaggaggaagagaaggaattaatggtgaaggttcatagtgagaaa
ttggccattgcttatggacttatgaacacaaaaagaggaagtgagatcaggatcataaaa
aaccttagagtgtgcatagactgtcataactttaccaaatttatatccaagattactgaa
agagttattgttgtgagggatgccaataggtttcatcattttaaagatggtcaatgttct
tgtggagattactggtga
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