Cynara cardunculus var. scolymus (artichoke): 112501784
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Entry
112501784 CDS
T05604
Name
(RefSeq) syndetin-like isoform X1
KO
K23288
syndetin
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccav04131
]
112501784
Membrane trafficking [BR:
ccav04131
]
Protein recycling
Others
EARP complex
112501784
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
DMP19
Motif
Other DBs
NCBI-GeneID:
112501784
NCBI-ProteinID:
XP_024961276
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All DBs
Position
LG 1:complement(10691947..10716308)
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AA seq
1142 aa
AA seq
DB search
MQPSSFSVPPLALIPLALNHGNLSPEGFEIYRFLFLGSLLLSPGGGSCDNGGGMDLSKVG
EKFLSSVRSARSLGFLPSTSDRTEVPARAAAAATIARALASIPPHHRQNISSSSEQLSSI
YGSEHRDQVLEELEEEFYEEEFDPVRHALENIPSEENDHAYFERKASLRLLQLDKVTESL
SRQVMEHHEVMVKGMDLVGELEKDLKIANVICMNGRRHLTSSRNEVSRDLIVNTSSRRKQ
TLLEVLLVLKELRRAKHMQIELETHVNEDNFFKAFQVLSEYLQLLDSLSELSAIQEMSRG
VEIWLGKALQKLDSLLLGVCQDFKETSFLTVVDAYALIGDVSGLAEKIQSFFMQEVISGT
HAVLKSIVLEDLEAAEMQSTRLTYSDLCTRIPESKYRQCLLETLAVLFKLMCSYYTIMSF
HSEYKVPMGQVSHEVQKQADETGSSKNVQQAGSLSQYSCSSEVDVGFPSQSFQREPNLAS
MEEPLTSAIIFSDESGTGSFIPHDPSGSESRDDGGGASSSGSPWFQLRNDATVFVSETLQ
RGRNYLWQLATSRVSVLLSSAAVSSASIHQFLKIYEDLNIFILAGEAFCGAEAVEFRQKV
KAFCENYYIAFHRQNIHALKMVLERESWSMLSPETIQVVSFAGLVGDGAALISQTATSST
RNSHKSADLMKTGPKQGVFFHWIRSGNPFCSRYDSKCDGSPLHGVSAVSEEPNGKINGAS
HRNNSSHNSDANHSNGHADASEDENEDLLADFIDEDSQLPTRNFKPKHSSNHSLPWSSED
TRAHTGSSICVLRLMDKYARLMQRLEIINVELFKGICQLFGIFFYFIFESFGHQNTNPSG
KGNNEALTYRLKTALSRIFQDCSQWITSSSSSDNFFPHAPLNMPFSHMDITPTSPPSANS
SHIPGTSFGLKERCAGADTISLVAHLMYKFKAHLQSILLTNNATVLEEFYLHVVDSVPDL
TEQIHRTTAKLLFHISGYADRIASAKWEVKELGMEHNGYVDLLLGEFKHYKTRLAHGGIR
TEVQDLLIEYGLETISETLIEGLSRVKRCSDEGRALMLLDLQVLINGLQHFVTINVKPKL
YAVETFIKAYYLPETEYVHWARAHPEYTKSQMAGLINLVATMKGWKRKTRLEVLEKIESG
GL
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgcagccaagcagtttctctgtaccaccacttgctctcattccactcgctttgaatcac
ggaaatttgagtcctgaaggtttcgagatttataggtttttgttcttaggttcgcttctg
ttatctccaggaggaggcagctgcgataacggtggtggtatggatttgtcaaaggttggt
gagaagtttctcagttcagtacgctccgcgagatctctcggctttcttccttcgacttcc
gatcgtactgaggttccagcacgggctgcagctgcagcaactatagctcgtgcacttgct
tcaatccctccacatcatagacaaaatatctcttcaagctctgaacagctgagttctata
tatggaagtgaacatcgtgatcaagtactggaagagcttgaggaggaattttatgaagag
gagtttgatcctgttcgacacgccctagagaatattccatccgaagaaaatgatcatgca
tattttgagaggaaggcttctcttagattattacaactggataaagtaacagaaagtttg
tctcgccaagtgatggagcaccacgaagtaatggtgaaaggaatggatttggtaggcgag
ctggagaaagacttgaagattgcaaatgtcatttgcatgaatggacgaagacacctcact
tcttcaaggaatgaagtatcgagggaccttattgttaacacaagttctagaaggaaacaa
actcttctggaagtgcttctagttttgaaagagcttcgtcgtgcaaagcacatgcaaata
gaacttgaaacccatgttaatgaagataatttctttaaggcattccaggtcctgtccgag
tatcttcaacttctggatagcttatctgagctttcagctatacaagagatgagccgtggt
gtggagatttggctgggaaaagctctacagaagctggattcacttctattgggagtgtgc
caagatttcaaagaaactagctttttgactgtcgttgatgcttatgcattgattggtgat
gtttctggtcttgctgaaaagatacaaagcttctttatgcaggaggtcatatctggaacc
catgcagtccttaagagcattgtgctagaggatctagaagctgctgaaatgcaaagcacc
aggcttacatacagtgatctttgcactcggatacctgaatctaagtacaggcagtgtttg
ttggagactctagctgtcctcttcaagttgatgtgctcgtattacacaattatgagtttc
cattcagagtataaggttccaatgggccaagtatcacatgaggtgcagaaacaagctgac
gaaacaggatcttccaagaatgttcaacaagctggttcattatcacaatattcttgtagt
tccgaggtggatgttggttttccctctcaatccttccaacgagagcccaatttagcttca
atggaggaacctttgacatctgctatcatattctctgatgaaagtggaactggcagcttt
atccctcatgatccgtctggttcagaatcaagggatgatgggggtggagcttcaagcagt
ggatccccatggtttcagctgcgaaatgatgccacagtatttgtttcagagacattacag
agaggtcgcaattatctttggcaacttgcaacaagccgtgtgtcagtattgctctcatct
gctgcagtatcttctgctagcatccaccagtttttaaaaatatatgaagatctcaatatc
ttcatcttggctggggaagctttttgtggggctgaagcagttgagtttaggcagaaagtg
aaagctttttgtgaaaactattatattgcttttcacagacaaaatatacatgcccttaaa
atggttttggaaagagagagttggtccatgctgtcaccagagacaattcaggtagtgagt
tttgcgggtcttgttggtgatggagctgcattgataagtcaaactgctacctcctccact
cgaaattcccacaagtcagctgatttgatgaaaactggccctaagcaaggtgtattcttc
cattggattagaagtgggaatccattttgttcacgatatgattcaaaatgtgatggttcc
cctttgcatggtgtgtcggcagtctccgaagaacccaacggaaaaatcaatggggcatct
cacagaaataattcttcacataatagtgatgcaaatcatagtaatggtcatgctgatgct
tcagaagatgaaaacgaagatcttcttgcagattttattgatgaggatagtcaactacct
acccgtaactttaagcccaaacattcaagcaatcactcgttaccttggagctctgaagat
acaagagcgcacacaggatcatcaatttgtgtcctaaggttgatggataaatatgcaagg
ctaatgcaaagattagagataatcaatgtcgagttatttaaggggatatgccagttgttt
gggatctttttctattttatttttgaaagctttggtcatcagaacaccaatcctagtgga
aaagggaataacgaggctcttacttataggctgaaaacagccttatccagaatatttcaa
gattgcagtcaatggataacgtcatcatcttcttcagacaatttctttccacacgcacct
ttgaacatgccattttctcacatggacatcacacccactagtccacccagtgcaaattct
agtcatatacctggcacctcttttggactcaaggaaagatgtgcaggagctgacaccata
tctcttgttgcccacttaatgtataaatttaaggctcatcttcaatcaatacttctgacc
aataatgcaacagtgcttgaagaattttatttgcatgtggtggattcggtgccagatctc
acagagcaaatacatagaacgacagcaaagttactttttcatattagtgggtatgcggat
cgaattgccagtgctaaatgggaagttaaagagcttggaatggaacataatgggtatgtt
gacctgttattgggagaatttaagcactacaaaacaaggctcgctcatggaggtattcgg
acggaggttcaagatctcctaatagagtacggacttgaaactatttctgaaactctcatc
gaaggactctcaagagtgaaacggtgttctgatgagggtcgagccctaatgttattggat
cttcaggttttgatcaatggccttcagcattttgtcacgattaatgttaagccaaaatta
tacgcagtcgaaacttttattaaggcatattaccttccagaaactgaatatgtacattgg
gcacgtgctcatccggaatacacgaaaagccaaatggcggggctgatcaacctcgtggct
acaatgaaaggttggaaaaggaagaccagattggaagttttggaaaagatagagtcagga
ggcttgtag
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integrated database retrieval system
