Cynara cardunculus var. scolymus (artichoke): 112502342
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Entry
112502342 CDS
T05604
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112502342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112502342
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112502342
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112502342
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Herpes_glycoH_C
Motif
Other DBs
NCBI-GeneID:
112502342
NCBI-ProteinID:
XP_024962000
LinkDB
All DBs
Position
Unknown
AA seq
279 aa
AA seq
DB search
MSIKGSSSPSPPIVIRSVWAYNLESEFRLIQSIIDDYPYVSMDTEFPGVVVRPNAGYNYF
RHQSPSVHYLLLKSNVDVLKLIQVGLTLTDADGNLPDLGETNTNTRYIWEFNFKDFDPSR
DQYASESIDLLIRQGIDFQKNHDYGIDSVKFSELMMSSGLVCNELVSWVTFHSAYDFGYL
VKILTGRCLPDEMTRFMELLKTFFGDKVYDVKHLMRYCEGLYGGLDRVAKTLEVERAVGK
CHQAGSDSLLTWHAFQKIRDLCSGGPEKYAGVLYGLEVF
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatcaagggcagttcatcaccatcgccaccgattgtgataagatctgtgtgggcc
tataacctagaatctgagtttcgtttaattcaatcaatcatcgacgattacccttacgtt
tcaatggatacagagtttcctggcgtcgttgttcgtcccaacgccggttacaactacttc
cgtcaccagagcccttccgttcactacctcctcctcaaatcgaatgttgacgttttgaaa
cttatccaggtcggtcttacccttaccgatgccgacgggaacctccctgatctaggagaa
acgaacaccaacacacgttacatctgggaatttaacttcaaggattttgatccatcacgt
gaccagtacgcttctgaatcgattgacctgttgatacgacaagggattgattttcagaag
aatcatgattacgggatagactccgtcaaattctctgagctgatgatgtcatctgggttg
gtctgtaacgagcttgtgagctgggtgacgtttcatagcgcttatgatttcggctacctg
gttaagatcttgacggggcggtgtttacccgatgaaatgacccgattcatggaacttttg
aaaactttctttggggataaggtgtatgatgttaaacatctgatgaggtactgtgaaggt
ctttatggtgggttggaccgggtggctaagaccctcgaggtggagcgggcggttggaaaa
tgtcaccaggccgggtcagatagcttgctgacatggcacgcctttcagaagatcagggat
ctttgcagcggtgggcctgagaagtatgccggcgttctctatggattagaggttttctga
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