Cynara cardunculus var. scolymus (artichoke): 112502422
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Entry
112502422 CDS
T05604
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112502422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112502422
03012 Translation factors [BR:
ccav03012
]
112502422
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112502422
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112502422
Translation factors [BR:
ccav03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
112502422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
T2SSE
AAA_19
ATPase
Myosin_head
AAA_16
PhoH
Motif
Other DBs
NCBI-GeneID:
112502422
NCBI-ProteinID:
XP_024962083
LinkDB
All DBs
Position
Unknown
AA seq
1163 aa
AA seq
DB search
MHSRLGFLLACNSRRKPPLLATFFRIFTHNTLSNPSTSAVLSSSKINHGGPFFRFLSSIM
HCGGRRYISGHAVDQFSDDEYECDYENHPASSSVANIDEWKWKLSMLLNSGTDQEIVTRD
KRDKRDFEQISNLAKRMGLYCEMYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRR
VEGLLQEHLDRMQLYSGDVASSKSETSHQAELVNNGGHPDSLVDGSLMEKVLQRRSLQMR
NMQRAWEESPEGKKMLLARMSLPAFREKERLLQAIAQNQVIIISGETGCGKTTQLPQYIL
ESEIESGRGAFCNIICTQPRRISAMAVAERVSTERGEPLGESVGYKVRLEGMKGKNTHLL
FCTSGILLRRLLSDHNLHGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSAT
LNAELFSNYFEGAPMIHIPGFTHPVRAHFLEDIIEITGYKLTPFNQVDDYGQEKLWKTQR
QLVPRKRKNQITVLVEDALSQSSLENYSSKARESLSCWTPDVIGFNLIEAVLCHICRKER
PGAVLVFMTGWDDINCLKSQLRSHPLLGDPNRVHLLTCHGSMATSEQNLIFEKPSPNVRK
IVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV
QPGECFHLYPRCVFEAFSEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPAPLA
VQNAVDFLKMIGALDENENLTHLGEYLAMLPLDPKLGKMLIMGAFFRCFDPILTIVAGLS
VRDPFLLPPEKKEKASTAKSRFSAKDYSDHMALVRAYEGWKQAEREGSAYEYCWKNFLSA
QTLQAIHSLRNQFNYILKDALLLEADAGVNNRLSHNQSLVRAIICSGLFPGIASVVHREA
SMSFKTMDDGQVWLYTNSVNKQYQTIPYPWLVFGEKVKVNNVFIRDSTGVSDSILILFGG
GLVNGVLPGHLKMLGGYIDFFMDPTLAESYVSLKQELDQLLQKKLKDPNVDIHKEGKYLM
LAIQELVSGDLCEGRFVFGRESKKPKESPENDSFTRDGANPKSLLQTLLMRAGHSPPKYK
SKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAVEAMAWLTHTSGAKKDEGYPNSPP
DLTDNMLKILSKPRKPNSRSGRT
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgcattccaggttagggtttctattggcatgcaattccagaagaaaacctccgctcctt
gctactttcttcagaatcttcacacacaatactctaagcaatccctcaacaagtgcggta
cttagttcttcaaaaatcaaccatggaggtcccttcttccggttcctttcatcgattatg
cactgcggcggaagacgttatattagtggccatgcagttgatcagttctcagacgatgag
tacgaatgcgattacgagaaccatccggcatcatcatcggtggcaaatattgatgagtgg
aagtggaaacttagcatgctgttaaatagcggaacggaccaagagattgtgaccagagat
aagagagacaagagagactttgagcaaatatctaatcttgccaagagaatgggcctttac
tgtgaaatgtatggaaaagtggtggttgcgagcaaggtgcctcttcccaactacaggcca
gatcttgacgataagcggccccaacgggaggtagttatcccattaagcttgcaaagaaga
gtcgaaggtttgctccaagagcatcttgatcgaatgcaattgtattccggagatgttgct
tctagtaagagtgaaactagtcatcaggctgagcttgttaacaatggtggtcatccagat
tctttggtagatgggtctcttatggaaaaggttcttcagaggcggagtttgcaaatgcga
aatatgcaacgagcatgggaggaatcaccagaaggcaagaagatgttactggcacgtatg
tctcttcctgcattcagagagaaggaaagactgcttcaagcaattgcacagaatcaggtt
attatcatctctggagagaccggatgtggcaagactactcaacttccacaatacatattg
gagtctgagatagaatctggtcgtggtgcattctgtaatataatttgtacacagcctcgg
agaatatctgccatggccgttgcagaaagagtttctactgaaaggggagagcctcttggt
gaatcggttggttacaaagttcgattagaggggatgaaagggaaaaacacccacctgctt
ttctgtacaagtggtattttgcttcggaggctgttgagtgaccacaacttgcatggtgta
acccatgtctttgttgacgaaattcatgagcgaggcatgaatgaagacttcctattgatt
gtattaaaggatcttcttccacgccgaagagacctgagattgatactgatgagtgctaca
ctgaatgccgagctattttccaattactttgaaggtgcaccaatgattcacattcctggc
ttcactcacccagtgagggcacattttttagaagacataatagaaatcactgggtataag
ttgactcctttcaaccaagttgatgattacggccaagaaaaattgtggaaaacacaaaga
cagctagttccacgcaaaaggaaaaaccagataactgttcttgttgaggatgccttgagt
caatcaagtcttgaaaattatagttccaaggcacgcgaatctctgtcttgctggacaccg
gatgttattgggtttaatcttattgaggcagttttatgccatatttgccgtaaggaaaga
ccaggtgccgtccttgtatttatgaccggctgggatgatataaattgtttgaaaagtcaa
cttagatcccatcctttacttggggatcctaacagggttcatttgctaacatgccatggt
tccatggcaacgtctgaacagaacctcatatttgagaagccatctccaaatgtgcgtaaa
atagtactcgccacaaatatggcagaagcaagtatcacaataaatgacgtagtttttgtg
gttgactgtggaaaagctaaagagactacttatgatgccctgaataatactccttgtcta
ctaccttcatggatatcacaagcatctgcgcggcaaagaagaggtagggctggccgtgta
caaccaggagaatgcttccacctctatccccgatgtgtttttgaagctttctctgaatat
cagctacctgagcttttaagaactcccttaaattctctttgcttgcaaattaaaagtttg
caggttggtagtattggagaatttctgtcagctgcactacagccaccagcaccattagct
gtccaaaatgctgtggattttttgaagatgattggagcattagatgagaatgagaatctt
acgcatcttggtgaatatttggcaatgcttccattggatcccaagcttgggaaaatgcta
ataatgggtgctttctttcgttgctttgatcctattcttacaattgttgctggacttagt
gtcagagaccctttccttttgcctccagagaagaaagagaaagctagtactgcaaaatct
agattttctgcaaaggattacagtgatcatatggctcttgtccgtgcatatgaaggatgg
aaacaagctgaaagagaaggatccgcttatgagtattgctggaaaaatttcctttctgcc
caaacgcttcaggctatacattctcttcggaatcagtttaactacatcttgaaagatgct
ctattgcttgaggctgatgcaggcgttaacaacagattgagtcataatcaatcattggtt
agagccattatatgttcaggactctttcctggcattgcatctgtagtgcacagggaggca
tcgatgtctttcaaaactatggatgatggccaggtctggctctatacaaattctgttaac
aaacaataccagacaattccatatccctggcttgtctttggggaaaaggtgaaggtcaac
aatgtattcatacgtgattctactggtgtgtctgattcgattctaatcctctttggtggt
ggtctagtcaatggagttttgcctggacatttgaaaatgctaggaggatatattgatttc
ttcatggatcctacattggcggagtcctatgtgagcctaaagcaggaacttgatcagctt
ttgcaaaagaagcttaaagatccaaatgttgacatccacaaagaaggcaagtatctgatg
cttgctattcaggagcttgtgtcgggagatctatgcgaagggaggtttgtatttggccgt
gaaagcaaaaagcccaaagaatcacctgaaaacgatagtttcacaagagatggagcaaac
ccaaaaagtttgttgcaaactctgctgatgagggcaggccactctcctccaaaatacaaa
tcaaaacatttaaaaacaaatgaattcagggcgttggtagaattcaaaggaatgcagttt
gtaggaaaaccgaaaagaaacaaacagcttgcagaacgggatgctgctgttgaggcaatg
gcctggttgactcacacttctggtgcaaagaaagatgaaggttatccaaattcccctcct
gatctcaccgataacatgctgaagattctgagtaagccccgaaaacccaactctcgttct
ggtcgaacttga
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