Cynara cardunculus var. scolymus (artichoke): 112502783
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Entry
112502783 CDS
T05604
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112502783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112502783
03041 Spliceosome [BR:
ccav03041
]
112502783
03009 Ribosome biogenesis [BR:
ccav03009
]
112502783
03016 Transfer RNA biogenesis [BR:
ccav03016
]
112502783
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112502783
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
112502783
Spliceosome [BR:
ccav03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
112502783
Complex C
U4/U6.U5 tri-SnRNP related factors
112502783
Ribosome biogenesis [BR:
ccav03009
]
Eukaryotic type
Pre-60S particles
Helicases
112502783
Transfer RNA biogenesis [BR:
ccav03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
112502783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
112502783
NCBI-ProteinID:
XP_024962557
LinkDB
All DBs
Position
Unknown
AA seq
1043 aa
AA seq
DB search
MFFLTTLSVNLREVQFVPRIGDHKMEISSSVEKRKLPEENSEVMDAEIKNQELVSKKQRF
VARTCVHEVAVPSGYTSSKDKTVHGTLSDPIYSGKMAKAYPFVLDPFQQISVSCLERKES
VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDV
TLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPA
IKMVFLSATMSNATEFAEWICNIHKQPCHVVYTDFRPTPLQHYVFPMGGSGLYLVVDENE
QFREDNFLKLQDTFTKQKQTGANLGGNSKPSGRIAKGGNASGGSDIYKIVKMIMERKFQP
VIIFSFSRRECEQHAMSMTKLDFNSQEEKDVVEQVFRNAILCLSEEDRNLPAIELMLPML
QRGIAVHHSGLLPIIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVRKWDGDS
HRYVGSGEYIQMSGRAGRRGKDERGICIIMIDEQMEMNTLKDMVLGKPAPLVSTFRLSYY
SILNLMRRAEGQFTAEHVIRNSFHQFQYEKTLPDIGKKVAKLEEEVAKLDASGEADVAEY
HKLKLEISELEKKMMAEITRPERALYFLLPGRLVKVREAGTDWGWGVVVNVVKKPAPPLG
LLPPTMSSSRGSSYIVDTLLHCSIGSSESGSRPRPCPPRSGQKGEMHVVPVQLPLISALS
KLRISIPPDLRPMEARQSILLAVQELGKRFPQGLPKLNPVKVLEPIYIRVVTTEKLATFL
SHDMGIEEPEFVHLVNQIEKLEQQLLSHPLNKSQDENQMKCFQRKAEVNHEIQQLKTKMR
DSQLQKFRDELKNRSRVLKKLGHIDAEGIVQVKGRAACLIDTGDELLVTELMFNGTFNDL
DHHQIAALASCFIPGDKSSEQIHLRSELAKPLQQLQDSARRIAEIQHECKLEVNVDEYVE
AAVRPFLMDVIYCWSKGSSFSEVIQMTDIFEGSIIRLARRLDEFLNQLRAAAHAVGEAGL
EDKFGAASESLRRGIMFANSLYL
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgttctttttaacaactctatcagtcaatctaagagaagttcaatttgtaccgagaatt
ggtgaccataagatggagatttcttcaagtgttgaaaaacggaagctcccagaagaaaat
tcagaggtgatggatgctgaaattaagaaccaagaactggtatcaaagaagcaacggttt
gtggcacgaacttgtgtgcatgaggtagctgttccaagtgggtatacttccagtaaggac
aaaacagttcatgggacattatccgatccaatttatagtgggaagatggctaaagcatac
ccatttgttctcgatccatttcagcaaatttctgtgtcatgtttggagcggaaagaatca
gttctagtatcagcacatacatcagctgggaaaacggctgttgcagagtatgcaattgcg
atggcttttagagacaagcaaagggtcatctatacctctccattgaaagctttgagcaat
cagaaatacagagaactgagtcaggagttttctgatgttgggttgatgactggtgacgtc
acactttccccaaatgcaagttgcctggtcatgacaacagagattcttaggggaatgctt
tacagaggatctgaggttttaaaagaagttgcatgggttatatttgatgagattcactat
atgaaggatcgtgaacgtggggtcgtttgggaagagagcatcatatttttgcctccagct
atcaagatggtctttctttccgcgaccatgtcgaatgctaccgagtttgcagaatggata
tgcaacatacataaacagccttgtcatgtggtctacactgatttcagacccacacctctg
cagcattatgtgtttcccatgggtggatcaggattgtatcttgtagtggatgagaatgag
cagtttagagaggataattttttgaagctgcaagacactttcactaagcagaagcaaact
ggtgcaaatctaggtggaaattccaaaccgagtgggagaattgctaaaggaggaaatgct
tctggtggatctgatatatacaaaatcgtcaagatgatcatggaaagaaaatttcaacca
gttataattttcagctttagcagaagagagtgtgagcaacatgcaatgtcgatgaccaaa
cttgatttcaatagccaggaagagaaagatgtggtggagcaagtcttccgaaatgcaata
ctgtgcttgagtgaggaggatagaaacctccctgcaattgagctgatgttgcctatgttg
cagcgaggcattgctgttcatcattctggccttcttcctattatcaaggaactggtagaa
ctcttattccaagaaggccttgtaaaagcactttttgccacagagacgtttgctatgggg
ttgaacatgcctgcaaaaacagttgtctttactagtgtaaggaaatgggacggtgatagc
catcggtatgtaggatctggtgagtatattcagatgagtggaagagctggacgtcgtggc
aaagacgaacgtggtatatgcatcataatgattgatgaacagatggagatgaatactctc
aaggacatggtcttggggaaaccagctccactggtcagtaccttcaggctgagctactac
tcaattttgaacttaatgagacgtgctgagggccaatttacggcagagcatgttatcaga
aactcttttcaccagtttcagtatgaaaagaccttacctgatataggaaaaaaggttgcc
aagttagaagaggaagtagccaagcttgatgcttctggagaggctgacgttgctgaatat
cataagcttaagcttgaaatatctgaacttgagaagaagatgatggcagaaataacaagg
cctgagagagctctatattttcttctacctggtaggctggttaaggttcgagaagctgga
acagattgggggtggggagtggttgtcaatgtggtgaaaaagcctgccccaccactaggc
ttattgccccctaccatgtcttcatcacgtggtagtagctatatagtggacactttgctt
cattgttctattggttcaagcgaaagtggttctcgtccaaggccatgtccaccacgttct
ggacagaagggcgaaatgcatgtggttcctgttcaattgcccttgatatcagcattgagc
aagctcagaatatcaattcctcctgatctccgtccaatggaagcacgacaaagcatacta
ttggcagtacaggagcttggaaaacgttttcctcaaggtcttccaaaacttaatcctgtg
aaggtgttggagcctatatatatcagagtagtcactactgagaagctggccacttttctt
tctcatgatatgggcatagaagaacctgagtttgtgcacctggtaaatcagattgagaaa
cttgaacagcaattgctttctcatccattaaacaagtctcaagatgaaaaccagatgaaa
tgtttccagaggaaagcagaagtgaatcatgaaattcagcagttgaaaacaaaaatgcgt
gattcgcagcttcaaaaattccgtgatgaactaaagaaccgatcacgggttctaaagaag
cttggacatattgatgctgaaggaatagtgcaagtgaagggccgtgcagcatgcttgatc
gacacaggagacgaactactggtcactgaattgatgtttaatggtaccttcaatgatctg
gatcatcatcaaattgcagcccttgcaagttgttttattccaggagataaatcaagtgag
caaatacatttaagatcagaacttgctaaaccgttgcaacaacttcaagacagtgcacgt
agaatagcagagatacaacatgaatgcaaattggaagttaatgtggatgagtatgtggag
gcagcagttagaccattcttgatggatgtcatatattgttggtcaaaaggatcatctttt
tctgaagttatacaaatgacagatatctttgaagggagtattattagacttgctagaagg
cttgatgagtttcttaatcagttgcgtgctgctgcacatgctgttggagaagctggttta
gaggacaagtttggtgcagccagtgagagcctccgtagaggtatcatgtttgcaaattct
ctatatctgtga
DBGET
integrated database retrieval system
