Cynara cardunculus var. scolymus (artichoke): 112502825
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Entry
112502825 CDS
T05604
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112502825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112502825
03036 Chromosome and associated proteins [BR:
ccav03036
]
112502825
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112502825
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112502825
PBAF complex
112502825
GBAF(ncBAF) complex
112502825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
YEATS
Motif
Other DBs
NCBI-GeneID:
112502825
NCBI-ProteinID:
XP_024962595
LinkDB
All DBs
Position
LG 1:complement(11555477..11559295)
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AA seq
543 aa
AA seq
DB search
MSVNNSNLQKNSGVSSPFGNIIPPNPNPHLQSQSQPQQPSGSPFTSQFQLSHFAAAHAHA
QAIAQAQSKAQAKAAAQAQANHAQFQAQLQAQGLAINQSHGPLATNSPSFPGSGNVSTKP
MPQKLLGRPPGVSNSNAYSPMRMMELTPAGRKKKQKLPDKQLQDRVAAILPQSALYTQLL
EFESRVDAALVRKRIDIQEATKNPPCIQKTLRIYIFNTFANQVLTIPKKPNPEPPTWTMK
IIGRILEEGMDPDQAGMISKPNPMYPKFSSFFKRVTISLDQRLYPDNHMIVWDSSRTPTP
QEGFEVKRKGDKEFSVNIRLEMNYMPEKYKLSSALIEVLGVEVDTRARIISAIWQYIKAR
KLQDTNDPSYFHCDPPLLKVFGEEKMKFSMVSQRISSHLSPPQPIHLEHRIKLVGNSPTG
NACYDVLVDVPFPVQKELNALLANTEKTKEIETCDEAICATIRKINEHKKRRAFFLGFSE
SPVEFIDALIESQGRDLKFLAGEASRSAEKEHRADFYNQPWVEDAVIRYLNRKPAINSHG
RTY
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgaacaacagtaatctccaaaagaactctggtgtatcttccccctttggaaat
atcataccaccaaatcctaatccccatctccagtcacagtcccaacctcaacaaccgtct
ggatctccctttacgagccagtttcagctctcccattttgctgcagcccatgcccatgcc
caagccattgctcaagcccagtcaaaagctcaagccaaagctgcagctcaagctcaagct
aaccatgctcaattccaagcccagctgcaagctcaaggacttgctattaatcaatcccat
ggacctctggctactaattcaccatcctttccgggatctggcaatgtgagcaccaaacct
atgccgcagaagttgcttgggcggccacctggagtgtcaaattctaatgcctattctccc
atgaggatgatggagcttacaccagctggccgtaaaaagaagcagaagcttccagataag
cagttacaagatcgagtggctgcaattctgccacaatctgctttatacacgcagctcctt
gagtttgagtcgcgagttgatgctgctttggtgagaaagaggatagacattcaagaagct
actaaaaacccaccttgcattcagaaaacccttcgaatatatattttcaacacatttgct
aatcaggttcttacaattcccaagaagccgaatcctgagccgcctacttggacaatgaaa
ataatagggagaatattggaagagggaatggatcctgatcaggctgggatgatctcaaaa
ccaaaccccatgtacccaaagttttcatctttcttcaaaagagttactatttcattggac
caaagactctatcctgataaccatatgattgtgtgggatagttctagaacaccaacacct
caggaagggtttgaagtcaaaaggaaaggggataaggaattctctgtgaatatacggttg
gaaatgaattatatgcctgagaagtataagctttcttctgctctaatcgaagttcttgga
gttgaagttgatacccgggcaagaattatttctgcaatctggcaatatatcaaggctagg
aaattgcaggatacaaacgatccttcctattttcattgtgatccaccacttctgaaagta
tttggggaagaaaaaatgaaattttcaatggtctcgcagaggatttcaagccatttatct
ccaccacaacctatacatttggagcataggatcaagcttgtgggaaacagtccaactgga
aatgcatgttatgatgtattggtggatgtgccgtttccagtacaaaaggaattgaatgct
ttattggcaaacactgagaaaaccaaggagattgaaacctgtgatgaagcaatatgtgca
acaatacgaaagataaacgagcataaaaaaaggcgggcgttctttcttggattcagcgag
tcacctgttgagtttattgatgctctgattgaatctcaaggcagagatctgaagtttctt
gcaggggaagcaagccgtagtgcggaaaaagagcaccgtgctgatttctataaccaaccc
tgggttgaagatgcagtcatccgttatctaaatcgcaaaccagctataaactcccatgga
aggacatattag
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