Cynara cardunculus var. scolymus (artichoke): 112502922
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Entry
112502922 CDS
T05604
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112502922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112502922
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112502922
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112502922
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
112502922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Motif
Other DBs
NCBI-GeneID:
112502922
NCBI-ProteinID:
XP_024962711
LinkDB
All DBs
Position
Unknown
AA seq
604 aa
AA seq
DB search
MEMDSTSRGRPFDRSSRDPATLKKPRLLTEETPFLRGSSNVPNGGGRPLVQRQPAFGFRS
TAERDRDSESNDSMRGGGGYQPQSLTQSQLQQQQHHELVSQYRTALAELTFNSKPIITNL
TIIAGENVQAAKAIAATICTNILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVF
CKAYRQVDSAVHPGMRHLFGTWKGVFPLQSLQLIEKELGFQSATNGSSSGLAASRSEPQP
QRPVRSIHVNPKYLEARQRLQQSSTAKGPTSDTNLINSPEDSERQDRITANTSSVRPRAD
PRLKNIQQAQRDVESACIRENDGAPYSDFDYCSDVLIPSEASFGKSSEIVAEQGFDSSWY
GAGSNTTETISGQRNGFDVKHGFSNLSASRSANADVKLQPVNNIASKRGGEVNRSWKNSE
EEEYMWDDMNSRLATPGKSGSSSKRDPRAHSMNEKLGFENRLQKPQGIQNIGSKVDREAS
SDSLSANQKDGAVFRQPVQSLGSRRNLLDHAEVHSTSFSGVSTSVNSLSKTSLQPQIGAS
HIGTQPLGFPPNAITGQRHTLGAASSSGQAPTHQRPPSPLLPTYHSSKILHNLSGRDPPT
THQL
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggagatggacagcacttctcgtggtagaccatttgatagatcatcgagagatcctgct
acactgaaaaaacctcgattactaactgaagagacaccgtttcttcgcggcagtagtaat
gttcctaacggtggtggtagaccccttgttcaaaggcaaccggcgtttgggttccggtcg
acggcggagagagatagagactcagaaagcaatgattcaatgagaggtggaggaggttat
cagccccagtcgctaacgcaatcacagctgcagcagcagcagcatcatgagcttgtgagt
cagtataggacagcactggcggagctgactttcaattcgaaacctattattactaacctg
actatcattgcgggagagaacgtgcaggctgcaaaagccatagctgccactatctgcaca
aatattcttgaggttcccagtgatcaaaagttgccatcgttataccttcttgacagtatt
gtgaagaatattgggagagattacatcaaatactttgctgccagactacctgaggtcttc
tgcaaggcatatagacaggttgattctgcagtacatcctggtatgcggcatctttttggg
acttggaaaggagtattccctcttcagtcacttcaacttatagagaaagaacttggcttc
caatcagctacaaatggatcttcttcagggttggcagcatctagatccgagccacagcct
caacgccctgttcgcagtattcatgtaaatccgaagtatttggaggcgagacagagactc
caacagtcaagtacggcaaaaggtccaactagtgacacaaacctgattaactcacctgag
gattccgagagacaagacagaataacagccaacactagttctgtgaggccacgtgcagat
cctcggcttaagaacattcagcaggcacaaagagatgtggagagcgcttgtatacgtgag
aatgatggtgcaccatatagtgattttgattattgttctgatgtgttgattccttcagag
gctagttttggaaaatctagtgaaatagttgctgagcagggatttgacagttcttggtat
ggagctggcagcaatactacagagactatatctggccagagaaatggttttgatgtaaaa
catggattctccaatttgtcagcctctagatctgcaaatgcagatgtcaaattgcagcct
gtgaataacattgcaagcaaaagaggcggtgaggtaaatagaagctggaagaactcggag
gaagaggagtacatgtgggatgacatgaactcacgactggcgactccaggcaaatctggt
agtagctctaagagagaccctcgtgcacattccatgaatgaaaagttgggttttgagaat
cgcctccagaaaccacaagggatacaaaatattggttctaaggttgatagagaagcttca
tctgattcactatctgcaaaccagaaagatggagcagtttttagacagccagtgcaatca
ttaggctctcgtagaaatttactagatcatgcagaagttcattctacctctttcagtggg
gtatctacatctgttaactctctctccaaaacctctttgcagccacagataggcgcctct
cacattggaacccagccacttggatttcctccaaatgcaataacgggccaacgacatact
cttggagctgcatcatcgtcaggacaagcaccaacacaccagcgtcctccttcacccttg
ttgccaacatatcattcaagtaaaatattgcataatttatctgggcgagatccaccgacg
actcatcagctg
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