Cynara cardunculus var. scolymus (artichoke): 112503161
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Entry
112503161 CDS
T05604
Name
(RefSeq) DNA polymerase delta catalytic subunit isoform X1
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03030
DNA replication
ccav03410
Base excision repair
ccav03420
Nucleotide excision repair
ccav03430
Mismatch repair
ccav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112503161
03410 Base excision repair
112503161
03420 Nucleotide excision repair
112503161
03430 Mismatch repair
112503161
03440 Homologous recombination
112503161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccav03032
]
112503161
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112503161
Enzymes [BR:
ccav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
112503161
DNA replication proteins [BR:
ccav03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
112503161
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
112503161
MMR (mismatch excision repair)
DNA polymerase delta complex
112503161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
DNA_pol_B_2
REV3_N
Motif
Other DBs
NCBI-GeneID:
112503161
NCBI-ProteinID:
XP_024962995
LinkDB
All DBs
Position
Unknown
AA seq
1096 aa
AA seq
DB search
MNKGNGRKRPAQQPPVPPQPPKHQATEVAIEEEDMDEDVFLEENLVDEDELILRDMEDRE
ALATRLEKWKRPVLSTGYQSQSEKIVFQQLEIDYVIGESHKELIPTSAGSAAIIRIFGVT
KEGNSVCCNVHGFEPYFYISCPPGMGPDDISRFHQILEGRMREVNRNNKVPKFILRIELV
QKKSIMYYQQHSSQPFLKIIVALPTMVSSCRGILDKGIQIDGLGMKSFMTYESNVLFVLR
FMIDCKIVGGNWIEVPAHKYKKTARNLSYSQLEFDCLYSELTSHVPEGEFSKMAPFRILS
FDIECAGRKGLFPEPTHDPVIQIANLVTLQGEEQPFVRNVMTLKSCSPIVGVDVMSFDTE
REVLLAWRDFIREIDPDIIIGYNICKFDLPYLIQRAETLGITEFPLLGRIRNSRVRVKDT
TFSSRQYGTRESKEVTLEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLNEQKEDVHHSII
SDLQNGNPETRRRLAVYCLKDAYLPQRLLDKLMYIYNYVEMARVTGVPISFLLSRGQSIK
VLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMM
AYNLCYCTLVTPEDVRKLNLPPECINKTPSGETFVKTNLQKGILPEILEELLAARKRAKA
DLKEAKDPLVKAVLDGRQLALKVSANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTK
RLVEDKFTTLAGYEHNAEVIYGDTDSVMVQFGVPTVDEAMNLGREAADFISGTFIKPIKL
EFEKVYFPYLLISKKRYAGLYWTNPKSFDKMDTKVLLQNAREKGIETVRRDNCLLVKNLV
TECLHKILIDRDVPGAVQFVKNTISDLLMNRMDLSLLVITKGLTKTGEDYEVKAAHVELA
ERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQISK
PLLRIFEPILKNASRELLHGSHTRAISISTPSNSGIMKFAKKQLSCVGCKALISNKDHTL
CSHCKGREAELYCKTVANVSELEKLFGKLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKA
QKDMAEAKVQLERWNF
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagggcaacggcaggaagaggccggcgcagcaaccacccgtgccgccacaacca
ccgaagcaccaagcgacggaggtggctatcgaagaggaagacatggacgaggatgtattc
cttgaagaaaaccttgttgacgaagatgaactcatcctccgcgatatggaagatcgggaa
gccctcgcaactcgccttgagaaatggaaacggccagtattatctacggggtaccagtct
cagtcagagaagatagtttttcagcaattggagattgattacgtgattggagagagtcac
aaagaattgattcctacctcagctggctctgctgctattatcagaatatttggtgtaacc
aaggaaggaaatagtgtatgctgtaatgttcatggatttgaaccatacttttatattagc
tgtcctcctggaatgggccctgatgatatatctcggttccatcaaattcttgaggggagg
atgagagaagtcaacaggaacaataaggttcctaagttcattctccgtatagaactagtt
caaaagaagagcattatgtactaccagcagcatagttctcagcccttccttaaaattatt
gttgcattgccgacaatggtttctagttgccgaggaattcttgacaaagggatacaaatt
gatggtcttggtatgaaaagcttcatgacatatgagagtaatgttctttttgttcttcgc
ttcatgattgattgcaaaatcgttgggggcaattggattgaagttccagcccacaaatac
aagaagacagcaaggaatctttcatactctcagttagagtttgactgcctttattctgaa
ctgactagccatgttccagaaggagaattttccaaaatggctccatttcgcatattaagt
tttgacattgagtgtgctggtcgtaaaggcctttttcctgagcctacgcatgatcctgtt
attcagattgcaaatctggtcacacttcagggagaggaacagccatttgtgagaaatgtc
atgaccctaaagtcatgttcgccaatagtcggtgttgatgtgatgtcatttgacacagag
agagaggttttgctggcttggagggattttattcgtgaaattgatccagatatcataata
ggttacaacatttgcaaatttgacttgccatatctgattcagagggcagagacattggga
ataaccgagtttccgttactgggccgcatcagaaatagtagggttcgtgtcaaggataca
actttttcctcaagacagtatggtacaagggaaagcaaagaagttacactggaagggaga
gttcaatttgatttacttcaggctatgcaaagggattataaattaagctcgtattcgctg
aattctgtttcagcacactttcttaatgagcagaaagaggatgttcatcattcaattata
tctgaccttcagaatggtaacccagagacaagacgaagattggctgtatattgtctcaag
gatgcctatctccctcagcggctgttggacaagttgatgtacatttacaattatgtggaa
atggctcgagtcacgggtgttcctatatcatttcttctttctagagggcagagcatcaag
gtactctctcaacttctaaggaaagcaaaacagaagaatctagtgattcctaatgtgaaa
caagcaggatctgaacaaggaacgtatgaaggtgcaactgttttggaagccagagcggga
ttctatgagaagccaattgccacattggattttgcatctctatatccatcaatcatgatg
gcatataacttatgctattgcactctagtgactcctgaagatgtccgcaagctcaacctt
cccccagaatgcatcaacaaaacgccatctggtgaaacatttgtcaagacaaatttgcag
aagggtatacttccagaaattcttgaagaactgttagctgctcgtaaaagagccaaggca
gatttgaaagaagcaaaggatcctctagtgaaggctgtattggatggtcgccagctggct
ttgaaggtaagtgcaaattcagtgtatgggtttacaggagctaccattggccagttacca
tgcctagagatatcttccagtgttacgagctacggtcgacagatgattgaacatacaaaa
agacttgttgaagataaatttacaacacttgcaggatatgagcataatgccgaggtcata
tatggggatacagattcagttatggtgcaattcggtgtgcctactgtggatgaagccatg
aacctgggtagggaagctgcagatttcataagtggtactttcatcaaacctataaaacta
gagtttgaaaaggtttatttcccatatctactgatcagtaaaaagaggtatgctggtctc
tattggacaaatccgaaaagtttcgacaagatggatacaaaagtcttgttgcaaaatgca
agggaaaaaggcattgaaactgtacgaagggacaactgtctgttggtcaaaaatctggtg
actgagtgccttcacaaaatactaatagatagggacgtacctggagctgttcaatttgta
aagaataccatttcggatctacttatgaatcgcatggatttgtctcttctggttattacc
aagggactgacaaaaacaggagaggattatgaagtcaaggcagcacatgttgaacttgca
gagcgaatgcgaaagcgagatgcagctactgctccaaatgtcggagatcgagtaccatat
gtcattattaaagctgccaaaggtgccaaggcatacgagaagtcagaggacccgatatac
gtgttggaaaataatatacccattgatcctcaatactaccttgaaaatcagataagcaag
ccactattgaggatatttgaacccatcttgaagaatgctagtagagaacttcttcatgga
agccatactagagctatttccatctctactccatcaaatagcgggataatgaagtttgca
aagaagcaactaagttgtgttggttgcaaagctttaatcagtaacaaagatcatacactt
tgctcacattgcaaaggaagggaagcagaactttattgcaaaacagtagctaatgtatcg
gagttggagaagctttttgggaagctatggacacagtgccaggagtgccaaggatctctt
catcaagatgttttatgtacaagccgtgattgcccgatattctaccggaggaagaaagca
cagaaagatatggctgaagccaaagtccaattagaacgatggaacttctag
DBGET
integrated database retrieval system
