Cynara cardunculus var. scolymus (artichoke): 112503170
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Entry
112503170 CDS
T05604
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 16
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccav03009
]
112503170
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112503170
Ribosome biogenesis [BR:
ccav03009
]
Eukaryotic type
Pre-60S particles
Helicases
112503170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AP3D1
SecA_DEAD
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
112503170
NCBI-ProteinID:
XP_024963005
LinkDB
All DBs
Position
Unknown
AA seq
602 aa
AA seq
DB search
MSNIDENHHKEENQEGEQVKDLTFEELGLDPRLIRALTKKNIENPTPIQQIGIPLILEGK
DVVARAKTGSGKTFAYLLPLIQKLLSDNNNNNNNGSSSKALAPTAMILVPSRELCQQVYS
EVLSLIELCRVQLKVVQLTGEPSFSDMAAALAGPPHILVSTPACVQRCLSSGVLKAQSIQ
DSLSILVLDEADLLFTYGYEKNLKDLKTHIPIKCQCLLMSATSSDDVESLKKLYLHNPYI
LTLPEVGDAKDEIVPKNIQQFWIQCSDRDKLLHILALLKLDLVQKKVLIFTNTIDTSFRL
KLFLEQFGIKSAVLNAELPVNSRLHILEGLNAGLFDYLIATDDSDSKEKEQTDGNNQAEK
KKSKKHKKRKLDSEFGVVRGIDFKNVQTVVNFDMPASAAGYVHRIGRTGRAFNTGQSVSI
VSPDEMEIFEEIKLFLGENEDNDVTHIAPFPLLEKNAVEFLRYRAEDVARSVTKIAVKEA
RAQDLRNEILNSEKLKAHFQENPRDLELLKHDKLLSKKAPAPHLRNVPEYLLDPTTQQAS
KFVKLTRAAMGRNNNNGNRGSKGRFKKAGDPLKTFSAEAKGMKRKAKGGKEFGPKQKKKQ
DV
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatatcgacgagaaccatcataaggaagaaaatcaagaaggagaacaagtgaaa
gatcttacatttgaagagcttggattagaccctcgtcttattcgtgcccttacaaagaaa
aatatcgaaaaccccactccaattcagcagattgggattccattgatcctcgaggggaag
gatgtggttgctcgagcgaaaacgggttctggtaaaacgttcgcttacttgcttcctttg
attcagaaactcttatcggataacaacaataataataataatggttcatcttcaaaagcc
ctagctcccactgccatgattcttgtaccctctcgagagctctgccaacaagtttattca
gaagtgttgtcactaattgagctatgcagagtgcagctgaaagtagttcagttgacgggt
gaaccaagtttctctgatatggcggcagcattggcagggcctcctcatattcttgtgtct
accccagcctgtgttcaaaggtgcttgtcatctggtgttcttaaagcacaatcaattcag
gattcactttcgattcttgttcttgatgaggcagatcttcttttcacttacggatacgag
aagaatcttaaagatcttaagactcacattcctataaaatgccagtgtcttctcatgtct
gctacctcaagtgatgacgttgagagtttgaagaaactttatctacacaatccctacatt
cttactttaccagaagttggtgatgcgaaggatgaaattgtccccaaaaatattcagcaa
ttttggatacaatgcagtgatcgagataagcttctccacatcctcgcacttttgaagttg
gatctcgttcaaaagaaagtcttgatatttacaaatacaatcgacacgagttttagactg
aaactgtttctcgagcagtttggtataaaatctgcggtgttaaatgctgagttgcctgta
aattcacgtctacatattcttgagggattaaatgctgggctttttgattatctgattgca
accgatgatagtgactcaaaagagaaggaacaaactgatggcaataaccaggctgagaag
aaaaagtccaagaaacataagaagcggaagttggattccgagtttggtgttgttagaggc
atagactttaaaaacgttcaaacggtcgtaaattttgacatgcctgcaagtgcggctgga
tatgtacatcgaattgggcgtaccggaagagcatttaataccggtcaatctgtctcaatt
gtttctcccgatgagatggagatattcgaagaaattaaattgtttttgggagaaaatgaa
gataatgacgtaacacatattgctccatttccacttcttgagaagaacgcagtggagttt
ttacgatatagggctgaggatgttgcaaggagtgtgacgaaaattgctgtcaaagaagca
cgagcccaggatttacgcaatgaaattctcaattctgagaagctgaaagctcattttcaa
gaaaatccacgcgatttagaacttctgaagcacgataagcttctaagcaagaaagcgcct
gcaccccatctacgtaatgtgcctgaatacttgctagatccaacgactcagcaagctagc
aagtttgtcaaactcaccagagctgccatgggaagaaataacaacaatggcaaccgggga
tctaagggcaggttcaaaaaagctggagatcctctcaagaccttttctgcagaagctaaa
gggatgaagaggaaagccaaaggcggcaaggagttcggccccaaacagaaaaagaagcaa
gacgtataa
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