Cynara cardunculus var. scolymus (artichoke): 112503514
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Entry
112503514 CDS
T05604
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112503514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112503514
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112503514
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112503514
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
112503514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
Torus
Motif
Other DBs
NCBI-GeneID:
112503514
NCBI-ProteinID:
XP_024963308
LinkDB
All DBs
Position
Unknown
AA seq
708 aa
AA seq
DB search
MEDGEGGLSFDFEGGLDAAPTQPTASVPVIHQSTDNGPSASAANLSYSAALPSAVTDPAS
GAAAAANFAGRRSYRQTVCRHWLRSLCMKGEACGFLHQYDKSRMPICRFFRLYGECREQD
CVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPSVEEVLQKIQQLTSYNYGNSN
RFFQNRNANHSQQSEKFQFPQGNNDMNQATKPATTDSASLQPVLPSSPQQQQQQQVAQSQ
QQVSQLGQPQAQSNGQQNQANKTSIPLPQGTSSTRYFIVKSCNRENLELSVQQGVWATQR
SNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSKTGGSVGGGNWKYEHGTAHYGRNF
CVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAI
SLAAESKREEEKAKGVNPENASENPDIVPFEDNEEEEEEESEEDEDSFEQGFGLAAQGRG
RGSRGMIWPPHMPMGRGPRPMPGMRGFPPLMNMMGGDGFSFGGVGPDGFPVPDLMNMGPR
GFGPFGPRFSGDFQRPPFAGMMFHGRPGPHQHGNFPGGGFGMMMGPGPGPGRAPFMGLGG
GVAGRGGGRPVYPQPQQQLQPPQNTSRSKRDQVAVGGNDRYSGGGGSQPIGQDIGRPDDE
GQPGGENTFKNGESESEDEAPRRSRHGEGKKKRRGSEGDAATNSDDKI
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggaggacggagaaggaggtctgagcttcgacttcgaaggcggcctcgacgcagcaccc
acccaacccaccgcatccgtccctgtaatccaccaatccaccgataatggaccatccgct
tctgctgcaaacctcagctactcggctgcccttccctcggctgttacagaccctgcttct
ggtgccgccgccgcagccaatttcgccggaaggaggagttaccgtcagaccgtatgccgt
cactggctccgtagtttgtgtatgaaaggggaggcctgcgggtttcttcaccaatacgac
aaatcacgaatgcccatttgtcgattcttccgattgtatggagagtgccgtgaacaggat
tgtgtttataagcatacaaacgaagatatcaaggagtgtaacatgtacaagttgggattt
tgtcccaatggtcctgactgtcggtatagacatgcaaagctcccaggaccccctccttca
gtggaagaagtactccaaaagattcagcaactaacttcctacaattatggcaattctaat
aggtttttccagaaccggaatgccaaccactctcagcaatctgaaaaatttcagtttcca
caaggtaacaatgatatgaaccaagcaactaaacctgctacaacagattctgcttcattg
cagcctgtgctgccttcgtcgccacagcagcagcagcagcagcaggttgcacagtctcaa
caacaggttagccaattaggtcagccccaagcgcagtcaaatggccaacaaaatcaagca
aataaaacttcaatacccctacctcaaggaacatcaagcactaggtatttcattgtaaaa
agctgcaaccgtgaaaatcttgagttatccgttcaacaaggagtgtgggccacccaaaga
agcaatgaggctaaactaaatgaggcgtttgattctgtggagaatgttattttaatattt
tcagtcaacaggacgcggcattttcagggctgtgcaaagatgacttcaaaaactggtgga
tctgttggtggaggcaactggaaatacgaacatgggactgcacattatggacggaatttc
tgtgtcaaatggctaaagctatgtgaactgtccttccacaaaactagacacctgaggaac
ccttacaatgagaacttacctgtgaagataagcagagattgtcaagagctagaaccctcg
atcggtgaacagttggcttcgcttttgtatcttgaaccagacagcgagctcatggcaata
tcacttgcagcagaatcaaagcgggaagaggaaaaagcaaaaggagttaatccagagaat
gcaagtgagaatcccgatatcgtcccttttgaggacaatgaagaagaggaagaagaagaa
agtgaggaagatgaggacagttttgaacagggtttcggcttagcggcacaaggcagagga
aggggaagcagagggatgatatggccgcctcatatgcctatgggaaggggaccccgccct
atgccggggatgaggggattccctcctctcatgaatatgatgggaggtgacggattttct
tttggaggagtgggacctgatgggtttcccgtgcctgatcttatgaacatgggtccccgt
gggtttggtccattcggacctagattctctggcgatttccaacgtccaccattcgcaggt
atgatgtttcatggccgccctgggcctcaccagcatggaaattttcccgggggtgggttt
gggatgatgatgggtcctggtcctggacctggacgggccccttttatgggtttgggtggt
ggcgtggcaggaagaggtggcggccgccctgtttatccacagccacagcagcagctacaa
cctccacagaacaccagtcgcagtaagagggatcaggtggcagtgggtggtaatgataga
tatagtggcggtggtggctcccagcccataggccaagacatcggtagacctgatgatgag
ggtcaacctggtggtgaaaataccttcaaaaatggtgaaagcgaaagtgaagatgaagca
ccaaggagatccagacatggagaaggaaagaagaagaggcgtggctccgagggcgacgct
gccacaaactctgatgacaaaatttag
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integrated database retrieval system
