Cynara cardunculus var. scolymus (artichoke): 112503616
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Entry
112503616 CDS
T05604
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
KO
K12857
Prp8 binding protein
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112503616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112503616
Spliceosome [BR:
ccav03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112503616
Complex C
U5 SnRNP specific factors
112503616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
WD40_RFWD3
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_Nup120_160
Beta-prop_IFT140_1st
eIF2A
PEP5_VPS11_N
Beta-prop_WDR19_1st
DUF2066
Motif
Other DBs
NCBI-GeneID:
112503616
NCBI-ProteinID:
XP_024963387
LinkDB
All DBs
Position
Unknown
AA seq
469 aa
AA seq
DB search
MVFWMYHLDQRTNFMYQRDLMYQKLIDTNSSLLAVDLISKVLQNPRIWRGSWALFVEAGE
KKSKSRSNSKIDQHSFVGYHWLLTKVSRWRWFVETSTLTTPDLVVTRFCGDLHHHHTRKH
SDSTPRISNPNLLCIKSESILALHISYQSDRLRSLLPRTVPSVWKNYRRMVLIWVSLSRC
AGFYDWVTVLDGTQESAYEWTPHSLSYRILAFHNKTCIIPTGDHKLSVKKISDGSQIISA
SPDKILRAWDVETGKQIKKMAEHSSFVNSCCPSRRGPPLIVSGSDDGTAKLWDMRQRGAI
QTFPDKYLVITVGFSDASDKIYSGGIDNDVKVWDLKRNEVTMTLQGHQNMITGMQLNPDG
SYLLTIGMDCTLRIWDMRPYAAQNRCVKIMEGHQHNVEQNLLKCGWSPDGSKVTAGSSDR
MVYIWDTTSRRILYKLPGHSGSVNECVFHPSQPIIGSCSSDKQIYLGEI
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggtgttttggatgtatcacctcgatcagagaaccaatttcatgtatcaaagggatttg
atgtatcaaaaactcattgatacaaatagctccctcctcgctgttgatttaatttcaaag
gttcttcaaaaccctagaatttggaggggtagttgggctttgtttgtagaagcaggagag
aaaaagtcgaaatcgaggagcaacagcaagatagatcaacacagttttgtgggttaccac
tggttattgacaaaagtatctcgttggcgatggtttgtggagacctccactctcaccaca
ccagatcttgtggttaccaggttttgtggagacctccatcatcaccacaccaggaaacac
tccgacagtaccccacgtatatcgaatcccaaccttctctgcatcaaatctgaatcgata
cttgctctacacatcagctatcaatcggaccgtcttcgctcccttctccctcgtaccgtt
ccctcagtgtggaagaattaccggcgaatggttttgatttgggtttcattatccagatgt
gctgggttttacgattgggtaactgttctggacggaactcaggaaagtgcttatgaatgg
acaccacattcattgtcatatcgtattcttgctttccataataaaacctgtatcatacct
acaggtgaccataaattatctgttaaaaagattagtgatgggtcacagataatctcagcc
agtccagacaagatactgagggcatgggatgtagagacagggaagcagataaagaagatg
gcagaacactcgtcttttgtaaactcatgttgtccttctcggaggggtcctcctcttatt
gtgagtggatcagatgatgggactgctaagctgtgggatatgcgtcaaaggggtgctatc
caaacgtttccagataaatatctggtcataactgttggcttttctgatgcttcagacaag
atatacagtggtggaattgacaatgatgtcaaagtgtgggatcttaagagaaatgaggtt
accatgactcttcaaggtcatcagaatatgataactggtatgcaattgaaccctgatggg
tcttacctccttaccattgggatggactgtacacttcgtatatgggatatgcgtccatat
gcagcccagaatcgttgtgtgaagataatggagggacaccagcataatgttgagcagaac
ctgctcaagtgcgggtggtcacctgatgggagcaaagttactgctggtagttctgatagg
atggtatatatttgggatactacttcaagacgcatattgtataagcttcctgggcactct
ggatcagttaatgaatgtgttttccatccctctcaacctattataggatcttgcagcagc
gataarcagatatatcttggggagatctga
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