Cynara cardunculus var. scolymus (artichoke): 112503718
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Entry
112503718 CDS
T05604
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112503718
Spliceosome [BR:
ccav03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
112503718
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_12
TPR_1
Motif
Other DBs
NCBI-GeneID:
112503718
NCBI-ProteinID:
XP_024963475
LinkDB
All DBs
Position
Unknown
AA seq
1083 aa
AA seq
DB search
MKLQISPMDAADASAMETMSEAVGSPEEVYEIDAGGSLDFESWTSLILEVEKTYSDNIKA
ISSVYESFLSLFPLCHGYWKKYADHQARLCTMEKAVEIFEQAVQSATYSVGLWVDYCSFS
ILAFADPSDIRRIFERGLSFVGKDFLCHRLWDLYIRFELSQQQWSSLAHILIRSLKFPTK
SLHKYYDNFREFAAFVEEDMSCPKSCNLEPHAADSNVEVARSDDEIIAIKELQNSSSIEL
RSKALYKFITIGERFYSKACQLHEKIDYFENYMERDFFHVKPLEDEELENWHNYLDFIEK
QEDFDWAVKLYERCLIPCANYPEFWMRYVEFIESKGGREIANFALERATQVFLKNVSEVH
IFNARFREKIGDIEGARAALLRGENGSDSSFIETAIREANMEKRLGNLDTALDIYDKALK
MAADKEKMHIIPILYIQLFRLKYLITGSEDAAVDLLIAGIQQVPHSRLLLEELINFAMLH
EGSRHLNVVDPIMATAITCGSDGSQGLSSKDREDLSHLYLKFVDYCGTTHDIGKAWNRHI
KSFPHLIRSSSSHKSPSNQLLNEPEEVRERIPRLVAKQPIVVNSIEHIPRVSAEENHKLS
ISKNQAIKPHEATANQHGGNDEDNAAGEFKSLKRHSRNDASEMIESSLALHKRGEIESVY
IDSIDHIQSQKDTLGPNEPQVSHKYDQIRHKPEKEHEVEMLLIPVSLESLSLLTREKGPN
VLEDTVPSVNNENPSTSTRNPFSATESAKKQNGTEEHGSESLSFSPGHRNLREQTDPQQY
SSQNPETCCKTNHMLTASEDASAESDGQPRQHHRQPHQGFPLIHESTANQDHPNPTKENI
ENNTWPVANVQPQSSSSAPQPVQPHPNLASMVQYPVQNTEQSGLVQNAHAYNQMWQYQYQ
YQQQQNQQQWLQMQQSYLMQQQQFQPQQYQVYQQQDQYQQYMYQVYQQQQEQGHQQLLQQ
QQQMQEYMWMQQYQQMQQQMPQDFSQNKQQQIAVMSNQMWNGSHDQQGHATMLPHPTTTP
AGFETPYTQQNSENRVAQPTGASGSAPTNIGSPSNCQPSSHRASSVPSKSLHSPSLEQTL
QSG
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgcagatatcccccatggatgccgctgatgcttccgccatggaaacgatgtct
gaagcagttggttctcctgaagaagtttatgaaattgatgcgggtggctcattggacttt
gaatcttggacatcactcattttagaggttgagaaaacttactcggacaacataaaagca
atatcatcagtgtacgagtcattcctttccctgttcccattgtgtcatggatattggaag
aagtatgcagatcaccaggcacgactctgcacaatggagaaggctgttgaaatctttgaa
caggcagtgcaatcggcaacatactctgttggattgtgggttgactattgtagcttcagt
atacttgcttttgcagacccatctgacattcgtcgaatatttgaaagagggttgtccttt
gttggaaaggattttttatgtcatagattatgggatttgtacatcagatttgagttatct
cagcagcaatggagttcccttgcacacattctcatccgttctctaaaatttccaacaaag
agcttacacaagtattatgacaattttagagagtttgctgcttttgtagaagaggatatg
tcatgcccaaaaagttgcaaccttgagccccatgcagctgattcaaatgtagaagttgcc
agatccgatgatgaaatcattgccatcaaggaactacaaaattcctccagtattgagctg
aggtctaaagctctatataaatttatcaccattggtgaaaggttctatagcaaagcatgc
caattgcacgaaaaaatagattacttcgagaactatatggagagggacttttttcatgta
aaaccacttgaggacgaggagctagaaaattggcataattatctggatttcattgagaag
caagaggactttgactgggctgtgaaactgtacgaaagatgcttaattccctgtgctaat
taccctgaattctggatgcgctatgtggagtttatcgaatccaaggggggacgagaaata
gcaaattttgctctagaaagggcgacacaagtatttttaaagaacgtgtcagaggtgcat
attttcaatgcaagatttagagagaaaataggagacattgaaggagctcgtgctgcattg
cttcgtggtgagaacggatctgattcgtctttcattgaaactgcaataagagaggccaat
atggagaaacgtctgggaaatttggacacagctttggacatttatgataaagcactcaaa
atggcagcagacaaggagaagatgcacatcatccctattctgtatattcaacttttccgt
cttaaatacctgatcactggcagtgaagatgctgctgtcgacttactaatagcgggtatt
cagcaagtgcctcattctaggttactcctagaggaattgataaactttgcaatgctgcac
gaaggatcaagacatttgaatgttgttgaccccattatggccactgccataacctgtgga
tcagatggctcccagggtttaagctccaaagatcgtgaggatttgtcccatttgtatttg
aagtttgttgactactgtggaaccacccatgacataggaaaggcatggaaccgtcacata
aaatcttttccccacctgataaggagtagctcttcacataagtcgccttccaatcagctt
ttgaatgagccagaagaagtaagagaaaggatccctcgtcttgttgcgaagcagccaatt
gtggttaatagtatcgagcatataccccgggtttcagccgaagagaaccacaagttgtcg
atttcgaaaaatcaagctatcaagccacacgaggctacagccaaccagcatggaggaaat
gatgaagataatgcagctggagaatttaaaagcttaaaacgccattctagaaatgatgca
tctgaaatgatcgaatcatctcttgctttacataagcgaggagaaattgaatctgtatat
atagattcaatcgaccatatacaatcccagaaagatacattaggaccaaatgagccacag
gtatcacacaaatatgaccaaatcagacacaagccagaaaaagaacatgaagttgaaatg
cttctaataccagtttctttggagagtctttctttgttaactcgggaaaaaggacctaat
gttctggaggataccgtgccctctgtaaataatgagaacccttcgacatccactcggaac
cctttttcagccactgaatctgccaagaaacaaaatggaacagaagaacatggatcagaa
agtttgtcattttcaccaggccatcggaatcttcgtgaacaaacagatccacaacaatat
tcttcacaaaatccggaaacttgctgcaaaacaaatcacatgcttacagcctctgaagat
gcaagtgccgaatctgatggccagccacgtcagcatcatcgtcagccacaccaaggtttt
ccgttaattcatgaatcaactgctaaccaagatcatccaaatccaacaaaggaaaatata
gagaacaacacctggcctgtggcaaatgtacagccacagagctcttcatctgcaccccaa
ccggttcaacctcatcctaatcttgcatcaatggttcagtatcctgtgcaaaatactgaa
caatctggacttgttcagaatgcacacgcttataatcaaatgtggcaatatcaatatcaa
taccaacagcagcagaatcagcaacaatggctgcaaatgcaacaatcttatttaatgcag
cagcaacagtttcagccacagcaatatcaggtgtatcaacagcaggatcagtaccaacag
tatatgtatcaggtgtaccagcagcaacaggagcaagggcatcagcagttattgcagcaa
caacaacaaatgcaagaatatatgtggatgcaacaataccagcagatgcaacaacagatg
ccacaagattttagtcagaataagcagcagcagattgctgtgatgtccaatcagatgtgg
aatggtagccatgatcaacagggccatgcaacgatgctgccacaccccacaaccacacct
gctggctttgaaacaccgtacacacaacaaaactctgaaaacagggtggcccaacccacg
ggtgcaagtggaagtgcaccaacaaacattggctctccaagtaattgccaaccatcttcc
catagggcttcatcggtcccttccaaatctctccattctccgtctcttgagcaaaccctc
caaagtggataa
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integrated database retrieval system
