Cynara cardunculus var. scolymus (artichoke): 112503747
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Entry
112503747 CDS
T05604
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112503747
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112503747
04121 Ubiquitin system [BR:
ccav04121
]
112503747
03036 Chromosome and associated proteins [BR:
ccav03036
]
112503747
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112503747
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
112503747
Ubiquitin system [BR:
ccav04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
112503747
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
112503747
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
112503747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
zf-C3HC4_2
BRCT_2
zf-RING_2
zf-C3HC4
zf-C3HC4_3
zf-RING_UBOX
zf-RING_6
zf-C3HC4_4
zf-RING_5
zf-HC5HC2H_2
RTT107_BRCT_5
zf-RING_10
zf-rbx1
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
112503747
NCBI-ProteinID:
XP_024963510
LinkDB
All DBs
Position
Unknown
AA seq
978 aa
AA seq
DB search
MESTSHLQRMAEELKCPICLSLLKSAVSLTCNHIFCNVCIDKSMKSDATCPVCKIPYRRR
EVRPAPHMDTLVSIYKNMEVCSGVNILVTQTQPQMSGHENQVENEIVCRSKTTSKACRDT
PKTQNQRRKRGKTLTGSSKRPKSHNSDPARPSFPVKKRVQVPQHPLQETPTRPANLEGGK
IECITDRTQTNVSGPEDEPHLHENGETLFSPFFWLRDDGDAERTIEPTPVEPVNDSPPDA
PCFSDIKDSDDHMTSKDGDIFDSEMFEWTQRPCSPELCSSPLKLQDKESDECDRVQEKGF
RGTSLHSVINTDNMEEVLPTSSPQQIKKVNHAAKAKESKKRAKRTKESIQKKRVKRDTDE
AVGICNVSPKIDQGEGSNTNDLVKQKKQIRRRGKKVSVDTSSTKALISKVAHVCDGETSG
HRDGSIVGLTDSSSIRQGSGNTHNANSFDENKKETTNQQQMNRDKRLKTLGPSNNSITEI
NKAISQFPSEPSLVDGEIKVCPSRIQTKKGKVFKELKTSKKVAFSISKGFNGKSFGDIPT
TSEYVATKGNQPLGEVHSSSKIEFNPHEKTNAMFLRKCDTLSCIRCAFCQSSEESNISGS
MTHYVKGKPIESDHEGVPRAIHAHRNCTEWAPNVYFEDDIAVNLEAELARSKRIKCSCCG
IKGAALGCYEKSCRRSFHFTCAKLTPECRWDDDNFVMLCPLHASHKLSNEMCGSQLQKTK
KSVPKRHVNIKQSQVPVSDTVSTTSRWDSHGVFTKIVLCCSALTSIEKETIARFESLSGV
TVLKKWDSRVSHVIASVDENGACRRTLKYLMGILEGKWILTIDWIKACMEVKKPVDEQLY
EINLDIHGFKGGPKLGQSRLLNKEQKLFNAFKFYFTGDFVASYKGYLHDLIIAAGGTVLH
RKPIPINHEPQFSEDINAKQFIIYNLELPDKFKAEERNLILSQRKSDAEALARSSGAVAA
SNSWILNSIAACKLQNLD
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggagtccacctctcacctgcaacgaatggccgaagaactcaagtgtcccatatgccta
agtcttctgaaatctgctgtttcgcttacgtgcaatcacatattttgcaatgtttgtatc
gacaaatccatgaagtctgatgcaacctgtcccgtatgcaaaattccttatcggagaaga
gaggttcgtcccgctcctcacatggataccttggtgagcatttacaagaacatggaagtt
tgttcaggagtcaacatactagtcactcaaacacaacctcaaatgtcaggtcatgagaat
caagttgagaatgaaattgtttgtagaagtaagacaaccagcaaagcttgcagagacaca
ccgaagacacagaaccagagaagaaaaagagggaaaaccttgacaggatcttcaaagagg
cccaaaagtcataattcagatcctgcgagaccatcttttccagtaaagaaaagggttcag
gtgccacagcatcctctgcaagagactccaacgagacctgcaaatcttgaaggtggaaag
attgaatgtatcacagatagaactcaaacaaatgtgtctggaccagaagatgaaccccat
ctacatgagaatggagaaacattattttcccctttcttttggttgagggatgacggggat
gctgaaagaacaatagaacctacaccagtagagcctgtaaacgattcaccaccagatgct
ccatgctttagtgatattaaggactctgatgatcacatgacgtcaaaggatggagacatt
ttcgacagtgagatgtttgaatggacacaaagaccttgctctccagagctttgttcaagt
ccattgaagttgcaggacaaagaatctgatgaatgtgacagagtccaagagaaggggttc
agaggcacctcattacactcggttattaatactgataacatggaagaggttttacccact
tcatccccacagcaaataaaaaaggttaaccatgcagctaaagctaaagagtccaagaag
agagctaaaaggacaaaggaaagcattcaaaagaagagagttaagagagacacagatgaa
gcggttggaatttgtaatgtgtcgccaaagattgatcagggtgaaggcagcaacactaac
gacttggtgaaacagaagaaacagattcgtagaagaggcaagaaggtttctgttgatact
tcatctaccaaggcattgatatcaaaggttgcacatgtatgcgatggagaaacttctggt
caccgagatgggagtatagttggcctgacagactcttctagtataagacaaggtagtggc
aacactcataatgccaatagttttgatgagaacaaaaaggagaccactaatcaacagcag
atgaatagggataaaaggttgaaaaccctaggaccaagtaataatagcattactgaaatc
aacaaggctatctcccagtttcccagtgagccttctcttgttgatggtgagataaaagtt
tgcccttccaggatacaaaccaaaaaaggtaaagttttcaaggaattgaaaacttccaag
aaggtggcattttctataagcaaaggctttaatggtaaatcatttggtgacattccaaca
acttctgaatatgttgctacaaagggaaaccaaccgctgggagaagttcactctagttcc
aagatagaattcaatcctcatgagaagacaaatgcaatgttcttacgtaaatgtgacact
ctttcttgtattcgttgtgccttctgccagtcctcagaagaatcaaatatttctggatcc
atgacacattatgttaaaggaaagcctatagagtcagatcatgaaggtgtaccacgtgcc
atacatgcacataggaactgcacagagtgggctccgaatgtatactttgaagatgatatt
gctgtcaacctggaggctgaattggctagaagcaagaggattaagtgttcttgctgtgga
ataaagggggcagctcttggttgttatgaaaagagttgtcgcaggagctttcatttcact
tgtgcaaaactaacaccagaatgccgatgggatgatgataattttgtcatgttatgccct
cttcatgcctctcataagctgtcaaatgaaatgtgtggttctcaactacaaaagacaaag
aaaagtgttccaaaaaggcatgttaacattaaacaatctcaagttcctgttagtgatact
gtcagcacaacatctcgttgggactcacatggagtatttacaaaaattgttctctgttgt
tcagctctcacaagtattgagaaggaaaccattgcaaggtttgagagtttatctggagtt
acagtgctgaagaaatgggattctagggtcagccatgtaattgcatcggttgatgagaat
ggggcatgcagaagaaccctcaaatatttaatgggaattttagagggcaagtggatcctt
actattgattggattaaggcttgcatggaggtcaagaaaccagttgatgaacagctctat
gaaattaatctcgacattcatggattcaagggtggtcctaaacttggacagtctaggcta
ttgaacaaggaacagaaactttttaatgcattcaagttctattttactggagattttgtg
gcttcatataagggatatctgcatgaccttataattgctgctggaggcacagtgctacac
aggaagccaataccaataaatcatgaaccacaattttctgaggacataaatgcaaagcag
ttcataatttacaacctcgagcttcctgataagttcaaagcagaagaaagaaacctgatt
ctgagccagagaaagtctgatgcagaggctttagcaagatcaagtggtgctgtagctgca
agcaactcatggatcttgaactccattgctgcttgtaagttgcaaaaccttgactag
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