KEGG   Cynara cardunculus var. scolymus (artichoke): 112503788
Entry
112503788         CDS       T05604                                 
Name
(RefSeq) pre-mRNA-splicing factor SPF27 homolog
  KO
K12861  pre-mRNA-splicing factor SPF27
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112503788
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccav03041]
    112503788
   03400 DNA repair and recombination proteins [BR:ccav03400]
    112503788
Spliceosome [BR:ccav03041]
 Complex B
  Other components
   Prp19 complex
    112503788
 Complex C
   Prp19-CDC5 complex
    112503788
DNA repair and recombination proteins [BR:ccav03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    112503788
SSDB
Motif
Pfam: BCAS2 THOC7 Plk4_PB2 Pyr_excise HMMR_N Spectrin
Other DBs
NCBI-GeneID: 112503788
NCBI-ProteinID: XP_024963553
LinkDB
Position
Unknown
AA seq 252 aa
MAMTTANNGDKVMLLEAPPSSRPSWSSSAAQIDALPYIDDEYGDPKVKTEVDRLIEEEMR
RSSKKPSDYLKDLPPVAKFNFENYPMLAREYERVRAGKPMVPLDMSRYGLDIPSMNKRND
ETAWKQALQKSQRLLQHQVIRLENLDLMSKYGADVWKQHNQRLEAFLSRMQAQAGELNGK
IEIVNRERKYHQQNTAYELNALSAQWKELCEKNIAIEAACVKVESYLEELKAEATERGWN
LDVNMENDLSFP
NT seq 759 nt   +upstreamnt  +downstreamnt
atggcgatgacgacggccaacaacggggataaagtaatgcttctagaagctcctccatct
tcgcggccgtcttggtctagtagcgcagcacaaatcgacgcattgccctacattgatgat
gagtacggcgaccccaaagtgaaaaccgaggttgaccgcttgattgaagaagagatgcgt
cgtagctctaaaaagccttcggattatcttaaagacctccctcccgttgctaaatttaac
ttcgagaattatccaatgcttgctagggagtatgagcgagtgagagctggaaagccgatg
gtgcctctggatatgtcaaggtatgggcttgacattccatcgatgaacaaacggaatgat
gaaactgcttggaagcaggcacttcagaaatctcaacgtttactccagcatcaagttatt
aggctggaaaatttggatctaatgtccaagtacggggcagatgtatggaaacaacacaat
caacggttagaagcattcttatcaagaatgcaagcacaggcaggtgagttaaatggaaag
atagaaattgttaatcgagaaagaaaatatcatcagcaaaacacagcatacgagcttaat
gctctatcagcacagtggaaggagctgtgcgagaagaacatagcaattgaagctgcatgc
gtaaaagttgaaagctacctcgaagaattaaaagcagaagctacggaaagaggctggaat
ctcgatgttaatatggagaatgacctttcatttccttga

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