Cynara cardunculus var. scolymus (artichoke): 112503889
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Entry
112503889 CDS
T05604
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03420
Nucleotide excision repair
ccav04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112503889
09124 Replication and repair
03420 Nucleotide excision repair
112503889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccav04121
]
112503889
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112503889
Ubiquitin system [BR:
ccav04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
112503889
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
112503889
TCR (transcription coupled repair) factors
Cul4-CSA complex
112503889
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
112503889
NCBI-ProteinID:
XP_024963633
LinkDB
All DBs
Position
Unknown
AA seq
1089 aa
AA seq
DB search
MSTYNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG
RIATLELFRPHGETQDLLFIATERYKFCVLQWDADANEVITRAMGDVSDRIGRPTDNGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCPKPTIVVL
YQDNKDARHVKTYEVSLKDKDFVEGPWSQNNLDNGADLLIPVPPPFCGVLIIGEETIVYC
SASAFKAIPIRPSITRAYGRVDADGSRYLLGDHSGLLHLLVIAHEKEKVTGLKIELLGET
SIASTISYLDNAFVYVGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLE
RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSATDDLYDTFLVVS
FISETRILAMNLEDELEETEIEGFCSQVQTLFCHDAVHNQLVQVTSSSVRLVSSTSRELR
HEWHAPADYSINVATANATQVLLATRGGHLVYLEIGDGILIEKKHAQLKYDISCLDINPI
GENPNFSNLAAVGMWTDISVRIFSLPDLNLITEEHLGGEIIPRSVLLCAFEGIPYLLCAL
GDGHLLNFLLNTTTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKL
LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICH
QEQSRTFAICSLKYNQSSTEDSEMHFIRLLDDQTFEFISTYSLDQFEYGCSILSCSFSDD
SNAYYCVGTAYVMPEENEPTKGRILVFMVEDGKLQLVAEKETKGAVYSLNAFNGKLLAAI
NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEG
AIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHL
GEFVNRFRHGSLVMRLPDSDVGQIPTIIFGTVNGVIGVIASLPQDQYVFMEKLQTNLRKV
IKGVGGLSHEQWRSFYSEKKTVDSRNFLDGDLIESFLDLGRSRMEEISKTMNVSVEELMK
RVEELTRLH
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgagtacatataattacgttgttacggctcataaaccaacgaatgtcactcattcatgc
gtcggcaatttcactggtccacaagaactgaatcttattatagcgaaatgtacccgtatt
gagattcatttacttactcctcaaggtttgcagcctatgttggatgtgccaatatacgga
agaattgcaaccttggaactttttcgtcctcatggtgaaacacaagaccttctatttatt
gcaacagaaagatacaagttttgtgttcttcagtgggatgctgatgcgaatgaggttatt
acaagagcaatgggtgacgtctcagatcgcataggcagacctaccgacaatggccagatt
ggcataattgacccagactgcagacttattgggctccatctgtatgatggattattcaag
gtcattccatttgataacaaaggacaactcaaagaagcattcaacatcaggctagaagag
cttcaagttttggatatcaaatttctgtatggttgtccaaagcctacaatagttgttctt
tatcaggataataaggatgctcgccatgtaaaaacttacgaggtttctttaaaggataaa
gactttgttgaaggtccttggtctcagaacaatcttgataatggggctgatttgctaata
ccagttccaccgccattttgtggtgtgttaatcattggagaggagacgattgtgtactgt
agcgcctctgcatttaaagcaataccaattagaccttctattactagagcctatggaagg
gtggatgcggatggttccaggtatttacttggtgaccatagtgggctccttcacttgctt
gtcatagcccatgagaaagagaaagttactggactcaaaattgagcttcttggggaaact
tcaattgcatcaactatatcatatcttgataatgcatttgtatacgttggttcgagctat
ggagattcccagctcattaagttgaatcttcagcctgatgcaaaaggttcttatgtggaa
gtgctagaaagatacgtcaacttgggcccaattgttgacttctgtgtggtagatttagag
aggcaaggtcaagggcaggttgtgacttgctcaggagcatataaagatggttcccttcgc
attgttagaaacgggattgggataaacgaacaggcatctgtggaactacaaggtatcaaa
ggaatgtggtcgctaagatcagcgacagatgatctgtatgacacattcttggttgttagc
ttcattagtgagactcggatattggcaatgaatctagaggatgagctagaggaaactgag
attgagggtttttgttctcaagtacagactttgttctgtcatgatgctgtgcataatcaa
cttgttcaggttacttcaagctctgtgagactggtcagttcgacatcaagagagctacga
catgaatggcatgcacctgctgattactccataaatgttgccacagctaatgctactcag
gttctattggctactagaggcggtcatcttgtttaccttgaaattggtgatgggatcttg
attgaaaaaaaacatgcacaactgaagtatgatatctcatgccttgacataaaccccatt
ggtgaaaatccaaacttcagtaaccttgctgcggttggtatgtggacggatattagtgtg
aggatattttcactccctgacctgaatctcatcactgaggaacatttaggtggtgaaatt
ataccccgctctgttcttctttgtgcctttgaagggataccttacttattatgtgccctt
ggagatggccatcttttgaacttcttgctgaacacgacgacgggtgaattaacagatagg
aaaaaggtgtcacttgggacccagccaataacactgcggacattttcatcaaagaatact
actcatgtgtttgcagcctcagatagaccaacggttatttacagcagtaacaagaagttg
ctctacagcaatgtgaacctgaaagaagtcagtcacatgtgcccgttcaattcagctgct
tttccagacagccttgccattgcgaaagaaggggagttaacaattggcacaattgacgat
attcagaagcttcacatccgttcaattcctctaggtgaacatgcacgacgtatctgccat
caggaacagtctcgtacatttgccatatgtagtctaaagtacaatcagtctagcacagaa
gattccgaaatgcacttcatccgcctgttagatgaccagacatttgaatttatatcgact
tactcactcgaccaatttgagtatggttgttccatattaagttgctctttctcagatgat
agtaatgcgtattactgtgtcgggacagcttatgttatgcccgaggaaaatgaaccaaca
aagggccgtattttggttttcatggttgaagatgggaagctacagctagttgctgagaaa
gaaactaagggtgctgtctactccttgaatgcctttaacggtaaactccttgctgctata
aatcaaaagattcagttgtacaagtggatgcttcgtgatgatggtacacgagagttacaa
tctgaatgtggacatcatggccacatacttgctctttacgtacaaactcgtggggatttc
atcgttgttggtgatttgatgaaatcaatttcactgttgatatataagcatgaggaaggc
gctatagaggaacgagcccgtgattacaatgcgaactggatgtcagccgtagagattctc
gacgatgacatttatcttggtgctgagaacaactttaaccttttcaccgtccgtaaaaac
agcgaaggcgccaccgatgaggaacgcggccgtctagaggtagtcggcgaataccatctc
ggtgaattcgtgaaccgcttccgacacggttccctcgtgatgcgtttgccagattccgat
gtcggccaaatcccgaccatcatttttggaaccgtcaacggtgttatcggcgtcatcgcc
tccctccctcaggaccagtatgttttcatggagaaacttcaaacaaacttgaggaaggtt
ataaaaggcgtcggagggttgagccatgagcaatggagatcgttttatagtgaaaagaaa
accgtggactcgagaaatttcttggacggagatttaatcgagtcgtttcttgatctgggt
aggagccgaatggaagagatttcaaaaactatgaatgtttcggtggaggagcttatgaag
agagtagaagagttaacaaggttgcattag
DBGET
integrated database retrieval system
