Cynara cardunculus var. scolymus (artichoke): 112503913
Help
Entry
112503913 CDS
T05604
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112503913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112503913
03012 Translation factors [BR:
ccav03012
]
112503913
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112503913
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112503913
Translation factors [BR:
ccav03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
112503913
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
T2SSE
Rad17
NACHT
BEX
Motif
Other DBs
NCBI-GeneID:
112503913
NCBI-ProteinID:
XP_024963654
LinkDB
All DBs
Position
Unknown
AA seq
1028 aa
AA seq
DB search
MRVHLRSLSPRFITNNHCCFPTTFRLFTTSMSYRPNSQGGRRGGGRGGGRGGGRRGGGGG
GGGGGGGGRGEQRWWDPVWRAERLRQMQGEVEAFDKNHWWGQIEQMKRGGEPELIIKHNF
SRGDQQTLSDMAYQLGLYFHAYNKGKALVVSKVPLPDYRADLDERHGSAQKEIRMSTETE
RRVENLLDSSTGTGKIDKISSGSMQRAKQFPNESDKTAGISVLERDDAKKALSVELKERQ
EKQKERDSVKEMCLFREKLPAHKVKAEFLKAVAANQVLVVSGETGCGKTTQLPQFILEEE
ISSLRGSDCNIICTQPRRISAISVAARISSERGESLGETVGYQIRLESKCSEQTRLLFCT
TGVLLRKLVQDPALTGISHLLVDEIHERGMNEDFLLIILHDLLPKRPDLRLILMSATINA
DLFSKYFGNAPTIHIPGLTFPVQELFLEDVLEKTRYAVKSESDNVQGYSRRRRRQQESKS
DPITEKFEDADISSVYKSYSANTRQSLEAWSGSETDLGLVEATIEYICRHEGPGAILVFL
TGWDEISKLLDNVKANNFLCNPAKFLLLPLHGSMPTVNQREIFDRPPSSMRKVVLATNIA
ESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYRL
YPKMVHDAMLQYQPPEILRTPLQELCLQIKSLQLGAIGTFLAKALQPPDALSVQNAVELL
KTIGALDDTEELTPLGRHLCTLPLEPNIGKMLLMGSIFQCVNPALTIAAALAHRSPFVLP
INRKEEADEAKRSFAGDSCSDHIAALKAFEGWKEAKRSGNEKSYCWENFLSMQTLKMMED
MRLQFLDLLSDIGFVDKSKGANAYNQYSDDMEMVCAILCAGLYPNVVQCKRRGKRTALYT
KEVGKVDIHPASVNAGVHLFPLPYMVYSEKVKTSSIYIRDSTNISDYALLMFGGNLIPSK
QGDGIEMLDGYLQFSASKSVLGLIKKLRGEVDRLLKRKIEEPQMDVSVEGKGVVAALVEL
LHNQNVQY
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgcgagtgcacttgcgctcgctttctccgcgtttcatcactaataatcactgctgcttc
ccaactacttttcgtctctttaccacatccatgtcttaccgtcctaattctcagggaggc
cgtcgcggtggcggtcgtggaggaggtcgtggaggtggtcgccgtggtggtggaggtgga
ggtggaggtggaggtggaggtggacgaggtgagcaaagatggtgggatcctgtttggcgt
gctgaacggcttcgacagatgcaaggcgaggttgaggcttttgataagaatcactggtgg
ggacagatagagcaaatgaaaaggggaggagagccagagttgataataaagcataacttc
agtcgaggagaccaacagactctttctgatatggcatatcaactgggtctttattttcat
gcatacaacaaaggcaaggcacttgtggtgagcaaagttccattacctgactaccgtgca
gatcttgatgagcgtcatggatctgcacagaaagagatacggatgtctacagagaccgag
agaagagtcgagaatttgttggatagttctacagggaccggaaaaattgacaaaatatcc
agtggatccatgcagagggccaagcaatttcccaatgaatcagataaaactgctggcatc
tcagttttagagagagatgatgcgaagaaggcacttagtgttgaactcaaagaaagacag
gaaaagcagaaggaacgtgattctgtgaaggagatgtgtttgttcagagagaagcttcct
gcacacaaagtgaaagctgagtttttaaaagctgttgctgcaaaccaggtattagtggtt
tctggagaaactggttgtggcaaaactacacagcttcctcagttcatcttagaggaggaa
atatcatcccttcgtggttctgactgcaacattatatgcacccaaccccgtcgtatatct
gctatatctgttgctgctcgaatatccagtgaaaggggagagagcctcggtgaaaccgtt
ggttatcagatccgtctggagtcaaagtgctctgaacagacaagattattgttctgcacg
acaggagtattgttgcggaagctggttcaggacccagctttaacaggaatcagccatttg
ctggtagatgaaattcatgaaagaggaatgaatgaagattttcttttgataattttgcat
gatcttctcccaaaacgtccagacttgcgacttatattaatgagtgccactattaatgcc
gacttgttctccaagtattttggaaatgccccaaccatccatatcccgggattgaccttt
cctgtgcaagagctatttctagaagatgtgctggagaaaacccgttatgctgtgaagtcc
gagtctgataatgttcagggttattcaaggaggaggaggagacaacaagagtctaagagt
gatcccataactgagaaattcgaggatgcggacatcagctctgtgtacaaaagctacagt
gcaaatactagacaatctcttgaagcttggtctggttcagaaacagacttgggccttgtg
gaagcaaccattgaatatatctgtcggcatgaaggtccaggggcaattcttgtgtttctt
acaggttgggatgaaatctcaaagctgcttgacaatgtcaaggctaacaattttctatgc
aatcctgcaaaatttcttctccttcctcttcatggttcaatgcctactgtcaaccaacga
gaaatttttgatcgccctccatcaagcatgagaaaagttgttctagcaacaaacattgca
gagagtagtataactatagatgacgtggtttacgttattgactgtggaaaagcaaaggag
accagttatgacgctttaaacaagctggcatgtttgctaccatcatggatatcaaaagct
tcggcacatcagagacgtggtcgagctggtcgtgtacagccgggggtctgttatagattg
tatccaaaaatggttcatgatgctatgcttcagtatcaaccacctgaaattcttcgaaca
cctttgcaagagctgtgcttgcagataaaaagcttgcaacttggagccattggaacgttc
ttggctaaggcgctgcaacctcctgatgctctttcggttcaaaatgccgttgaacttctt
aagactattggcgctctagatgatacagaagagcttactccacttggacgccatttgtgc
actctgccattggagcctaatattgggaagatgcttctcatgggatcaattttccaatgc
gttaatcctgcattgacaatcgctgcggctcttgcacatcgcagcccatttgtccttcca
attaaccggaaagaggaggctgatgaagcaaaaagatcctttgctggtgattcatgcagt
gaccacatagctgctcttaaagcatttgaagggtggaaggaagcaaaacggtcaggaaat
gaaaaatcatactgctgggaaaatttcttgtcgatgcaaaccttgaagatgatggaggac
atgagactccaatttctggatctactctctgatattggcttcgtagacaaatcgaagggt
gcaaatgcttataaccaatacagtgacgacatggagatggtatgtgcaatactttgtgcg
gggctctacccaaatgtcgttcaatgcaaaagaagaggaaaacgaacggccctctacact
aaagaagtcggaaaagttgatatccatcctgcatctgtcaacgcaggtgtccatcttttc
cctcttccttacatggtttatagcgaaaaggttaaaactagcagcatatacattcgagac
tccacgaatatatcagattatgctctgctcatgttcggtggcaatctcattcctagcaaa
caaggagatggtatcgagatgctcgatgggtacctccagttttccgcatccaagagtgtt
ttgggattgataaagaaactacgaggagaagtagatagattattgaaaaggaagatcgaa
gaaccgcagatggatgtttctgtcgaaggaaaaggagtcgttgccgctcttgtcgagttg
ctgcacaaccagaatgttcagtattga
DBGET
integrated database retrieval system
