Cynara cardunculus var. scolymus (artichoke): 112504020
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Entry
112504020 CDS
T05604
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03013
Nucleocytoplasmic transport
ccav03015
mRNA surveillance pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112504020
09122 Translation
03013 Nucleocytoplasmic transport
112504020
03015 mRNA surveillance pathway
112504020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112504020
03041 Spliceosome [BR:
ccav03041
]
112504020
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112504020
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112504020
Spliceosome [BR:
ccav03041
]
Complex C
Other components
EJC/TREX
112504020
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112504020
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
112504020
NCBI-ProteinID:
XP_024963753
LinkDB
All DBs
Position
Unknown
AA seq
430 aa
AA seq
DB search
MGENEIKDNDAYEEELLDYEEEDEKAPDSAGVKVNGEAVKKGYVGIHSSGFRDFLLKPEL
LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAA
LVLCHTRELAYQICHEFERFSTYLTDIKVAVFYGGVNIKIHKELLKNECPHIVVGTPGRI
LALARDKDLALRSVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR
PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKS
VSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERV
NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNQVQERFEVDIKELPE
QIDTSTYMPS
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaaaacgagataaaggataatgatgcttacgaggaagagcttctcgactacgag
gaagaggacgagaaggcccctgattccgctggcgttaaagtcaacggcgaagccgttaag
aaaggctatgtaggaattcacagttcaggattcagagattttcttttgaagccagagcta
ctccgtgctattgtggattcaggatttgaacatccttctgaagtgcaacacgagtgcatt
cctcaagctattttgggaatggatgtcatttgccaagcgaagtctggtatgggaaaaact
gccgtgtttgtcttgtccacactgcagcaaattgagcctgtggctggtcaagtagccgcc
cttgttttatgtcacacaagggaattagcttatcagatctgccacgaatttgaacgattc
agcacttatttaactgatatcaaggttgcggtcttctatggtggtgttaacattaaaatt
cacaaggaacttcttaaaaatgaatgccctcatattgttgttggaacgccgggacggatt
cttgcccttgccagagataaagaccttgcattgaggagtgtgaggcattttatactcgac
gagtgtgacaagatgcttgagtcacttgacatgaggagagatgttcaagaaattttcaag
atgactcctcatgataaacaagtaatgatgttttcggcaacactgagcaaggagattcgt
cctgtctgcaaaaagtttatgcaagatccaatggaaatttatgtggatgatgaagccaag
ttgaccctacatggtcttgtacagcactacatcaaattgagtgagctggagaagaaccgt
aagctgaatgacctgctcgatgcattagatttcaatcaagttgtgatattcgtcaaaagt
gtaagcagggcagctgagctgaacaaattgcttgtggaatgcaattttccatcaatctgc
attcactctggcatgtcccaggaagaaaggttgacacgctacaagggtttcaaggaaggg
cacaagagaatcttggtggcaacagatttagttgggaggggtatcgatattgaacgagta
aacattgtcataaactatgatatgccagattctgctgacacctatctccatcgtgttggg
agagctggaaggtttggaaccaaaggtcttgcgatcacatttgtgtcatctgcagctgac
tcagatgttcttaaccaggttcaggagagatttgaggttgatattaaggagcttcctgag
cagatcgatacttcaacatatatgccttcgtag
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