Cynara cardunculus var. scolymus (artichoke): 112504342
Help
Entry
112504342 CDS
T05604
Name
(RefSeq) vacuolar protein sorting-associated protein 54, chloroplastic-like isoform X1
KO
K17600
vacuolar protein sorting-associated protein 54
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccav01009
]
112504342
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccav04131
]
112504342
Protein phosphatases and associated proteins [BR:
ccav01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112504342
Membrane trafficking [BR:
ccav04131
]
Endosome - Golgi transport
Tethering complex
GARP complex
112504342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54
Syndetin_C
Vps54_N
COG2_C
GrpE
Motif
Other DBs
NCBI-GeneID:
112504342
NCBI-ProteinID:
XP_024964036
LinkDB
All DBs
Position
Unknown
AA seq
1005 aa
AA seq
DB search
MDPQPFPKSGRGIADRHNSSPSSLLAKTVSDASSQSLASILNNPHADSSWVGWWSSSAAV
AVPEFAAPPATKPPGSEITRSHFTSYLLSIAEHHSRFEDIRNHSNKESRDEVDRDHDERA
GEALVACLREVPALYFKEDFALEDGATFRAACPNSTVAENSVLQEKLSQYLDVVELYLVK
EISLRSNSFFEAQGQLEDMNLKIVEGCKRIRELKETIRLLDVDLVDCARQIQDLNLTRSD
LLALQQKLRLILYVNQSLAALKLLVASADCAGALDVTDDLKQFLDDDELTGLHCFRHLGD
HVAGAVDSVNSILSAEFLRVSISDSGGMDKIILAKAKARASSTGNVEDNKVELHQEDASS
FRDRLLPLIIGLLRTAKLPAVLRVYRDTVTSDMKTAIKSVVAELLPVLVARPLDSDFMPG
ERIVDNDGGGLSLASKLRSLSSDSFVLLLDTIFRIVQAHLLQAAEVKKSIEWIMSNLDGH
YAADSVADAIAHGALSAETAQIDYGLADSFVTYSVKKNAIKVPTFQEKGNDATSPSNMSK
NFRADVLRENTEAVFAACDAAHGRWAKLLGVRAALHPRLRVQDFLHIYNMSQEFITATEK
IGGRLGYSIRGTLQSQAKAFVDFQHESRMTKLKAVLDQEKWVEVDVPYEYRAIVISAFCS
ESLISGDLDNYSNGLAKGYDEVVHNNNASSALIDDGVSLSSSQEQVMKLSSQHADVSDST
EQINGIKVKNEHGKPSSHLLSFRGVGYHMVNSGLILLKMLSEYIDMNTVFPTLSSEVIRC
VLEMLKFFNTRTCQLVLGAGAMQVSGLKSITSKHLALASQVISFVHAIIPEIKRVLLVKV
AETRKGLLLSEIERVLQDYKVHRDEIHTKLVQIMKERLLVHLRGLPQIVETWHRSDETDV
QPSQFARNLTKEVGLLKRVLSRNLHEVDVQEIFREVTIAFDIQISDAFSRVDISTPQARA
RLACDIQHILGCIRSLPSANLSDSQDPVPAQLELLLQRVTAEADQ
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atggatccacagcctttccctaaatcgggaaggggcatcgcagatcgacacaactcctcc
ccctcttcgttattggcaaaaacagtctccgatgcgagtagccaaagtttggcttccatt
ctcaataacccacatgccgactcctcctgggtgggttggtggtcctcctccgccgccgtc
gcggtccctgaatttgctgcgccacccgccactaaaccccctggttcagaaataactcga
tcccatttcacatcttacctgttatcaattgccgaacatcatagcaggtttgaagacatc
cgaaaccattccaataaagagagcagggatgaggttgatcgtgaccatgatgaaagggca
ggggaagctctggttgcctgtttacgcgaagtgccagcattgtatttcaaggaggatttt
gcactggaagacggggcaaccttccgggcagcctgcccgaattctactgttgcagagaac
tcggtgttacaagagaagttgtcgcagtacttggacgtggtggagctttatttggtgaag
gagatctcgttacgttcgaattccttctttgaggcacaaggtcaattggaggatatgaat
ttgaaaatagtagaggggtgtaagcgaatccgtgaattgaaggagaccattaggcttttg
gatgtagatttagtggattgtgctcgacaaattcaggatttaaatctcaccaggagtgat
cttttggcactgcaacaaaagcttaggcttatactatatgtcaaccaatctcttgcagct
cttaagttgcttgttgcatctgctgattgtgctggagctttagacgttactgacgatttg
aagcagtttctggatgacgatgaactgactggcttacattgttttcgacaccttggggat
catgtagctggtgcagtagattctgtaaatagcattctttcagcagagtttctacgtgta
tcaatcagtgattctggaggtatggataagataatattagcaaaggcaaaagcgagggcg
agctcaactggaaatgtcgaagataacaaagtagaattgcatcaagaagatgcctctagt
tttcgtgatcgacttctaccactaattattggtttgcttagaactgcaaaactgcctgct
gtgttgcgagtatatcgtgatacagtaacatctgatatgaaaactgcaatcaagtcagtt
gtagcagagctgcttccagttcttgtcgccagacctttggactccgattttatgcctggc
gagcgaattgtcgataacgatggtggaggcttgtcacttgccagtaaattacgaagcctc
tcttctgatagttttgttctacttcttgacactattttcaggattgtacaggcacattta
ctccaagctgctgaagttaaaaaatccattgagtggatcatgtccaatcttgatggccac
tatgctgccgattcagttgctgatgcaattgctcatggtgctttgagtgcagaaacggct
cagattgattatggtctggctgattcttttgttacatattctgttaaaaagaatgctatc
aaagttcctacatttcaggaaaaaggaaatgatgcaacaagtccatcaaatatgtccaaa
aatttcagggctgatgtcttgagagaaaacacggaagccgtgtttgctgcttgtgatgct
gctcatggaagatgggcaaagctgcttggtgttcgtgctgctcttcatccaaggcttagg
gtacaagacttcctacacatatacaacatgtctcaagaattcataactgcaacggagaag
attggtggaaggttaggatatagtattcgtggaactttgcagtctcaggccaaggctttt
gttgattttcagcatgaatctcggatgacaaaactgaaggctgtgcttgatcaagaaaaa
tgggttgaagtcgatgttccgtatgaatacagggccattgttatttcagccttttgttcg
gaatctctaatttctggagacttggataattattctaatggtcttgctaaaggctatgat
gaagtggttcataacaataatgcttcctcggccctgatagatgatggtgtatcattgtcg
agttcacaagagcaggtgatgaaattgtcatcccagcatgctgatgtatctgatagcact
gagcagattaatggcattaaagtcaagaatgagcatggaaaaccttcttctcatttgctt
tccttcagaggtgttgggtaccatatggtaaacagtggcttaatcttgctgaagatgttg
tcggagtacattgatatgaatactgtttttccaacactctcttctgaggttattcgttgt
gttcttgaaatgttgaagtttttcaatacgaggacttgtcagcttgttcttggtgctggc
gccatgcaggtctcaggtttgaagtctattacatctaaacacttggctctggcaagtcag
gttatcagttttgtgcatgccatcattcctgaaatcaagagggttcttcttgtgaaagta
gctgagacgcgaaaaggattgttgctgtcagaaattgaaagagtgttgcaggattataaa
gtgcatcgagatgagatacatacaaaactggtgcaaataatgaaagaaaggttgcttgtt
catcttcgtggacttccacaaattgttgaaacttggcaccgatcagatgaaactgatgta
caacctagtcaatttgcacggaacctcacaaaggaagttggattacttaagcgtgtgctt
tctcggaatctgcatgaggtggatgttcaagaaatattcagagaagtgactatcgctttc
gacatacaaatctccgatgcattttcacgtgtagatattagcaccccacaagcgagagcc
aggcttgcttgtgatattcaacatattcttggatgcattagatcattgccttctgccaac
ttgagtgattcccaggacccagttccagcacaacttgagttgttactccaaagagttact
gctgaagcagatcaataa
DBGET
integrated database retrieval system
