Cynara cardunculus var. scolymus (artichoke): 112504420
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Entry
112504420 CDS
T05604
Name
(RefSeq) DNA helicase INO80 isoform X1
KO
K11665
chromatin-remodeling ATPase INO80 [EC:5.6.2.-]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112504420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccav03036
]
112504420
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
112504420
INO80 complex (yeast)
112504420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
DBINO
Helicase_C
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
112504420
NCBI-ProteinID:
XP_024964125
LinkDB
All DBs
Position
Unknown
AA seq
1510 aa
AA seq
DB search
MPTRSFLSCALPPPSSPTGLGVPLSNYHNTLWNPIAISGTRITTRISSILSQGESRGGPM
TDRSNGMMSEKRKRRNMYSSDEDQDDISDTYFSEEQYRAMLGEHVHKYKRRHKSNNLPTS
ASNRNGTSGMKNSLGSKDHKIVNGRSGGARKIETIPQNLGHYKEADFAPEYGMDRSVCEP
AYLDIGDGITYKIPPTYEMLATSLNLPRTSEIRVEEFYLTGTLDLGSLASMMSADKRLGP
RSGPGMGEPKPQYESLWARLSSPTLNNSPQKFSLKVSDDALDSYSAPEGAAGGFRRSIMS
ESGVLQVFYVKVLEKGDTYEIIERSLPKKQKEKKDPSMVEKEEMDKVDKYWVNMVRKDIP
KHHRFFINFHRKQLTDAKRFSENCQREVKMKVSRSLKLMRGASIRTRKLARDMLVFWKRV
DKEMAEVRKREEKEAAEALKREQELREAKRQQQRLNFLLSQTELYGHFMQNKPSSQPPGI
LVEKDKGDDQEAIMSSSEVGAEEDPEEAEMKMEALKAAQDAVSKQKMITSAFDDECSRLR
QASAAEDPEQAVAGSSNIDLLHPSTMPVASSVQTPELFKGSLKEYQLKGLQWLVNCYEQG
LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPTSVLNNWADEIGRFCPDLKTL
PYWGGIQERTILRKNINPKRLYRRDAGFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQA
IKSSTSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKG
IENHAEHGGTLNEHQLSRLHAILKPFMLRRVKKDVVSELTGKTEITVHCKLSSRQQAFYQ
AIKNKISLAELFDSNRGQLNEKKFMNLMNIVIQLRKVCNHPELFERNEGSSYFYFGDIPN
PLLPPPFGELEDVYYSGSKNPITYKVPKLIYQEIVRSSDVLLSGGKHNIKREFLEKHFNI
FSPVNIYQSIFKQDEHGPSTKDGTFGFTRLIDLSPAEAGFIANSSLMERLLFSIERWDWH
FSDGVVDFIMESEDKDIEYNHLGKEKVRAVTKMLLMPSKSETNVLRRRLATGPGDAPFEA
LVLSHQDRLASNVRLLHSAFSFIPQIRAPPIDTDCPDRDFAYRKVEELHHPWIKRLLVGF
GRTSDCNGPKKPDGAPHHLIQEIDNELPVLQPALQLTHKIFGSCPPMQSFDPAKMLTDSG
KLQTLDILLKRLRAGNHRVLLFAQMTKMLNIIEDYMNYRKYRYLRLDGSSTIMDRRDMVK
DFQHRSDIFVFLLSTRAGGVGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTV
YRLICKETVEEKILHRASQKSTVQQLVMTGGHIQGDILAPEDVISLLIDDAQMEQKLKEI
PAQVKDRQKRKGGTKAIRIDAEGDARLEDLMNPESPADVYTSSPAEKPVSSKKRKTSSEK
GTPKPRPQKAPKKLDSLASNTIVSGSESDDRLPHANMHQQTPQRTKRPTKSINENLEPVF
SAPVVMAEHE
NT seq
4533 nt
NT seq
+upstream
nt +downstream
nt
atgccaacccgtagcttcttatcctgcgcacttcctccgccttcttctccaacaggatta
ggagtgccgctttccaactaccacaacaccctatggaatccgatcgcaatctcaggaact
cgtataactactcgaatctcttcaatcttgagtcagggtgagagcagaggtggaccaatg
acggaccgaagtaatggaatgatgtcggaaaaaagaaagaggcgaaacatgtatagcagt
gatgaggaccaggatgacatctccgacacttacttttctgaggaacaatatagagcaatg
cttggggagcatgttcataagtacaagagaaggcacaaaagtaataatttgccaacttcg
gcctccaaccgaaatggaacgtctggcatgaagaatagccttggatcgaaggaccataaa
atagtgaatggccgttcaggaggagcacgcaagattgaaacaattcctcagaatctgggg
cactacaaagaggcagattttgccccagagtatggcatggacaggtcagtttgtgaacct
gcatatttggacattggcgatggcatcacatacaagattcctccaacttatgagatgttg
gctacctcattaaacttgcctagaacgtcagagatccgagtggaggagttctaccttaca
ggcacccttgatttgggctcattagcttcaatgatgtctgctgacaaaaggcttggccct
agaagtggaccagggatgggtgagcctaaaccccagtatgaatctctttgggcaagatta
agttccccaacattgaataactccccccagaagttcagtcttaaagtcagtgatgatgcg
ttggattcatattccgctccggagggagcagccggagggtttaggcgttctatcatgtca
gaaagtggagtgttgcaggtgttctatgtgaaggtgttagagaaaggggacacatacgag
atcatcgaacgcagtttacccaagaagcaaaaggagaagaaagatccatctatggttgag
aaagaggagatggataaagttgataaatattgggtgaacatggttagaaaagacatacca
aaacatcataggttttttatcaacttccatagaaagcaattaactgatgcgaagaggttt
tctgagaactgtcaaagagaggtgaagatgaaagtgagcagatcacttaagttgatgagg
ggtgcttcaatccgcacaaggaagctggcaagagatatgttggttttttggaagagagtg
gataaagagatggccgaagtgaggaaaagagaagaaaaagaagctgccgaagctttaaag
cgcgaacaggagcttcgtgaagccaagcggcaacaacagaggttaaattttctgttgtcc
caaacagaactctatggtcacttcatgcagaataagccatcttcccaaccgcctgggatt
ttagttgaaaaggacaaaggggatgatcaagaagcaattatgagttcttcagaagtaggt
gcagaagaagatcctgaagaggctgaaatgaaaatggaagccctgaaagcagcccaagat
gcagtctccaagcagaaaatgatcactagtgcatttgatgacgaatgttcgaggttgcgt
caagcttcagctgctgaggaccctgaacaagcagttgctggatctagcaacatagatttg
ttgcacccctcaactatgccagtagcgtcctcagtacagacaccagagttatttaaaggt
tctctgaaagagtatcagctaaaaggtctccagtggctggtgaattgttatgaacagggt
ctaaatgggattcttgctgatgagatgggccttgggaaaactatccaagcaatggcgttc
ttggctcatttggctgaagagaaaaatatatggggcccatttctggttgttgcacctact
tctgtcttgaacaactgggctgatgaaattggtcgcttctgccccgacttaaaaacactt
ccttattggggcggtattcaagagcggacgatacttaggaaaaacatcaatccaaagcgt
ctttatcgtagggatgctggatttcacattctcatcaccagctaccaactccttgtgtcc
gatgagaagtatttcaggcgtgtgaaatggcagtatatggtcttagatgaagctcaggca
atcaaaagttcaaccagtataagatggaagacactactcagtttcaattgtcgaaaccgt
ctgcttctgaccggaacacctgttcagaacaacatggctgagttgtgggccctccttcat
ttcatcatgccgactctatttgacagccatgaacaatttaacgagtggttttctaaaggt
attgaaaaccatgcggaacatggtgggactttaaacgagcaccaacttagcagattgcat
gccattctgaagcctttcatgttacggcgtgttaagaaggatgtcgtttctgagttaact
gggaaaacagaaattacagtgcattgcaaattgagttcgaggcaacaggctttttatcaa
gctataaagaacaagatatctcttgctgagttgtttgacagtaaccgcgggcaacttaat
gaaaagaaatttatgaacttgatgaacatcgtcatccaattgagaaaggtttgcaaccat
ccagagttatttgagagaaacgaaggaagttcatacttctattttggtgatatcccgaat
ccacttcttccacctccgtttggggaactggaggacgtatactactctgggagtaaaaat
cctattacatacaaggtaccgaaattaatataccaagaaattgtgcgaagttcagatgtt
cttttatcaggaggaaagcataatatcaaaagagaatttcttgagaaacattttaacata
ttctccccagtaaacatttatcaatccatatttaagcaagatgaacatgggccctctact
aaagatggaacatttgggtttactcgattgattgatctgtcaccagcagaagcagggttt
atagcaaattcttctttgatggagaggttattgttttctattgagagatgggattggcat
ttttcggatggggtcgtggacttcataatggaaagtgaggataaagatattgagtacaat
catcttggaaaggaaaaagtaagagcagtaacaaaaatgttactaatgccatccaagtcg
gaaacaaatgttcttaggaggagacttgcaactggacctggggatgctccgtttgaggcg
ttggtcctctcacatcaggataggcttgcatccaatgttcgacttcttcattcagctttc
tctttcattccgcagataagggcacctcctattgatacggactgtccagacagagatttt
gcttacaggaaggttgaggagctacatcatccttggattaagaggttattggttggcttt
ggacgcacgtctgactgtaatggacctaaaaagccagatggtgctcctcaccatctgata
caggaaattgacaatgaactacctgttttgcaacctgctctccagctgactcacaagatt
ttcggttcatgtcctcctatgcagagttttgatcctgcgaagatgctcacagactcgggg
aagcttcaaacattggatatacttttgaaacgcttgcgtgcaggaaatcatcgtgttctc
ctgtttgcacaaatgaccaagatgttgaatatcattgaggattacatgaactataggaaa
tacagatacttacggcttgatggatcctctaccataatggaccgtcgggacatggtcaaa
gacttccaacatcggagtgatatttttgtattcttgctgagcacaagagctggtggcgtt
gggatcaatttgactgctgctgacacagtcatattttatgaaagtgattggaatccgaca
ttggatttacaagcaatggacagggctcatcggttgggtcagactaaagatgttacagta
tataggttaatttgcaaagaaacagtggaagaaaagattttacacagagctagccagaaa
agtactgtccagcaattagtcatgactggtggtcatatacagggtgacatattagctcct
gaagatgttatttctttgctgatagatgatgcacaaatggagcagaagctaaaagaaatt
ccagcacaggttaaagatcgacaaaaaagaaaaggcgggactaaagctataaggatagat
gcagaaggtgatgcacgcttagaggatcttatgaatcctgaatctcctgcagatgtatac
acgtcctctcctgccgagaaaccggtgtccagtaagaagagaaaaactagtagcgaaaaa
ggaactccaaaaccaagacctcaaaaagctccaaaaaagctcgattctttggcctccaat
acaatagtatcgggatcagaatccgatgatcggcttccacacgccaacatgcaccagcag
acaccccagagaaccaaaagaccaacaaagagcataaacgagaatcttgaaccagtattt
tcagctccggtagttatggctgaacacgaatga
DBGET
integrated database retrieval system
