Cynara cardunculus var. scolymus (artichoke): 112504614
Help
Entry
112504614 CDS
T05604
Name
(RefSeq) transcription factor bHLH140
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
112504614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112504614
Enzymes [BR:
ccav01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
112504614
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
112504614
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
112504614
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
112504614
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
112504614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
AAA_33
zf-C2HE
Macro
HIT
AAA_18
Zeta_toxin
AAA_29
nSTAND3
CPT
MeaB
G-alpha
AAA_16
AAA_17
AAA_19
6PF2K
AAA_5
NACHT
AAA_22
MCM
ATP_bind_1
Motif
Other DBs
NCBI-GeneID:
112504614
NCBI-ProteinID:
XP_024964335
LinkDB
All DBs
Position
LG 2:complement(17051190..17056422)
Genome browser
AA seq
735 aa
AA seq
DB search
MMEVDDEMIKIKGEEEEKRKPIVVILVGAPGSGKSTFCDHVMRVSTRPWVRVCQDTIGNG
KAGTKAQCLALSNTSLKDGKSILIDRCNLDREQRADFVKLGESHQVDMHAVVLDLPAKLC
ISRSVKRTGHEGNLQGGKAAAIVNRMLQKKELPKLNEGFSRITFCQNENDVQAAMDTYGA
LSPSDSLPSGCYGEKNTDTKVQLGIMKFLKRVDAPNKVRSDKTVPGPLVEITKENHPVDA
SQDQQMGSESGTRPLDSPPPTLAFPSISTADFQFNIERASEIIVETVEEFINKLGNARVV
LVDLSRGSKILSLVKTKAAIKNIDPKKFFTFVGDITKLRSGGGLHCNVIANAANWRLKPG
GGGVNAAIYNAAGPELDAATKNRAGSLAPGKALTVPLPSTSSLFSKEGVTHVIHVLGPNM
NPKRPNCLKDDYNKGTKVLREAYLSLFENFASIVKTQEKLSDSSSVKPDIHSHLDGISNC
DQKVRREDGACITERNKKMKGFIGETEFKKSYSVNVKENATNSGKTGQSMNKDWGSWAQA
LYNIAMHPEKHRNDVIEVSDDIVVLNDLYPKAQKHVLVLSRAEGLDHLADLCEEHLPVIR
RMHDVGLKWAQTFLSENKSLVFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNS
PFFRDSVDIIQEVSEQGKATLHDDEKFMSMELRCNRCRSAHPNIPRLKSHISICRSPFPA
PLLQNGRLLTKGGTC
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgatggaagtcgatgatgagatgatcaaaattaagggggaagaagaagagaaaagaaaa
cccatagtggtaatactagtgggtgcacctggaagtggcaaatcgaccttctgtgatcac
gttatgcgggtatctacccgaccctgggtccgtgtttgtcaggacacaattgggaatggc
aaagccggaacaaaagcacaatgcttagcgctttctaacacctccttaaaagatggaaaa
agtatactaattgataggtgcaatctcgatagagaacagcgggcagattttgttaagctt
ggagagtctcaccaagtagacatgcatgctgttgttcttgatcttcctgcaaagctttgt
atatctcgatctgtaaagcgaactgggcatgaaggcaatttgcaaggtgggaaagctgct
gcaattgtgaatcggatgctgcaaaagaaagaactgcccaaattgaatgaagggtttagt
cgaataactttttgtcagaatgagaatgatgttcaggctgccatggatacgtatggagca
ctctcaccctcggatagccttccatctggctgttatggagagaaaaatactgatactaag
gtccaacttggtattatgaagttcttaaaaagagtagatgctccaaataaagtaagatcc
gataaaactgtgcctgggccattggtcgaaattaccaaagaaaatcatcctgttgatgca
agtcaagaccaacaaatgggatctgagagtgggacacgccctttagacagtcctcctccc
actttagcatttccttctatatccacagcagatttccagtttaatattgaaagggcttct
gaaataatagttgagacagttgaggaattcataaacaagcttgggaacgcaagggttgtt
ctagtggatttgtctcgtggatcaaagatattatccttggtgaagaccaaggctgctata
aagaacattgaccccaaaaagtttttcacgtttgtgggggatatcacaaaactccgctca
ggaggaggcctgcactgcaatgtgatagcaaatgctgcgaattggagactaaaacccggt
ggtgggggtgtaaatgctgctatatacaatgctgcaggtccagaactagatgctgcaaca
aaaaatcgagctggatctcttgctcctggaaaagcactcacggtccctcttccctcaact
tcttccttgttttctaaagaaggcgtaacacatgtcatacacgtgcttgggccaaatatg
aacccaaagagaccaaactgtctcaaagatgactataacaagggcaccaaagttcttcgc
gaagcttacttgtcactctttgaaaattttgcatctattgtgaaaacccaagagaaattg
tctgattcaagcagtgtaaaacctgatatccatagccatttagatggaatttcaaactgt
gatcagaaggttaggagagaggatggtgcctgtatcaccgagaggaacaagaaaatgaaa
gggtttataggagaaactgaattcaagaagtcgtattcagtaaatgtgaaggagaatgca
accaacagtgggaagacgggtcaaagcatgaataaggattggggctcatgggctcaagca
ctttacaacatcgccatgcatcctgagaaacataggaatgatgtaattgaagtttccgac
gacattgtggttttgaacgacctttacccaaaggcacaaaagcatgttttggtgctctca
cgggctgaaggtcttgatcatcttgcagacttatgcgaggaacaccttcctgttataagg
agaatgcatgatgtgggtttaaagtgggctcaaacatttctaagcgaaaacaaatcattg
gtattccgacttggatatcattcggcaccttcaatgagacaactccaccttcacgtcata
agtcaggatttcaattcgaaacatctcaagaacaagaaacactggaactcgttcaattct
ccattcttccgggactcagtggacataattcaagaagtgagcgaacaggggaaagcgaca
ctacacgacgatgaaaagttcatgtcaatggaattgagatgcaaccgctgtagaagcgca
catccaaacattcctcggctgaaatcacatatcagcatttgcagatcaccctttcctgct
cctctactgcagaatggccgcttacttacaaaaggtggcacttgctag
DBGET
integrated database retrieval system
