Cynara cardunculus var. scolymus (artichoke): 112505063
Help
Entry
112505063 CDS
T05604
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav00040
Pentose and glucuronate interconversions
ccav01100
Metabolic pathways
Module
ccav_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112505063
Enzymes [BR:
ccav01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
112505063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Motif
Other DBs
NCBI-GeneID:
112505063
NCBI-ProteinID:
XP_024964787
LinkDB
All DBs
Position
Unknown
AA seq
308 aa
AA seq
DB search
PNCIKLVITCILTIIGISQSQPITDVTTFGAIGDGITDNKLALGFHHCNRVKLIKVTSKN
SPKNHISINACDGAIVDNVTLIAPKESPNTDGIDISATNGVHVNGGTIQTGDDCIAINGG
SSNIHIDGLFCGSGHGVSVGSLGRNGKTDIVRNVTVINTTFTATQNGARVKTVPGGSGLA
DDITFSNITMVAVENPIILTQFYCPHKQCNDIAPVVHVSDVTFKDIHGTSSKPDAINILC
SKSPNSCAGITLEQINIGAANPAQXVVSNCHNTQVQTIGVVSPPIVCTPASFISMDTVTH
EQPXKDII
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
cccaattgcataaagcttgtgattacttgcattctgacgatcatcggtatctcacagtct
caacctataactgatgtaactacttttggagctattggagatggcatcaccgacaataaa
ttggctttaggatttcaccattgtaatagggttaagctaataaaagttacctccaaaaat
agcccaaaaaaccatatatcgataaatgcttgtgatggagccatagtcgacaacgtcacc
ctaatcgcacctaaggagagtccgaacaccgatggcatcgacatttcggctacaaatggt
gttcatgtgaatggtggaaccatccaaacaggtgacgattgcattgccatcaatggtggt
agctccaacatccacattgatggtctcttttgtggctcaggtcatggcgtaagtgttgga
agccttggaagaaatggcaaaacagacattgtacgtaatgttacagttatcaacaccacg
ttcaccgccactcaaaatggagctcgagtcaaaaccgttccgggagggtcgggtttggcg
gacgatatcacatttagtaacataacaatggtggctgttgaaaaccccatcatactcact
caattttactgcccgcataaacaatgcaatgacattgcacccgtggttcatgtaagcgat
gttaccttcaaagacatccatgggacttcttcgaaacctgatgcaatcaacattttgtgt
agcaaaagtcctaatagttgtgcaggcatcacactcgagcagatcaacataggagctgcc
aatccggcscaaakagttgtatcaaattgccataatacacaagtgcaaactataggggtc
gtgtctcctcctatagtttgcactcctgcaagctttatttcaatggacacagtaacccat
gagcaaccayctaaagacatcatttaa
DBGET
integrated database retrieval system
