Cynara cardunculus var. scolymus (artichoke): 112505115
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Entry
112505115 CDS
T05604
Name
(RefSeq) squamous cell carcinoma antigen recognized by T-cells 3-like
KO
K22611
spliceosome associated factor 3, U4/U6 recycling protein
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112505115
03036 Chromosome and associated proteins [BR:
ccav03036
]
112505115
Spliceosome [BR:
ccav03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
112505115
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
112505115
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
RRM_1
HAT_Syf1_CNRKL1_C
TPR_14
PRP6_TPR
NRDE-2
xRRM
Motif
Other DBs
NCBI-GeneID:
112505115
NCBI-ProteinID:
XP_024964838
LinkDB
All DBs
Position
Unknown
AA seq
649 aa
AA seq
DB search
HGTYGVEIYWILSVSLWYDYLNFIQKYDSSVRECSPTGISKARDLFERALIACGLHVAEG
SKLWEAYKSYEEAVLNSMDTMDFESREKQVQRIRNIFHRHLSIPHRDLMSTLLTYKAWEA
EHGNTLDVSSSSTEGISANVASAYQKAIEMLSMRADFEEKIVKNDMADTERLQSFMAYLK
FEQSCGDPARVKSLYERAITEFPISSDLWIDYTHYLNKTLKADKTLRDIFNRATRNCPWV
GELWVQFMLYLERCRCSEKELSDVFERSLLCTFSTIDEYVDIFLTRVDGLRRRILFAKEL
DDGLDYALIRDTFQRACDYLSPQLKNTYSLLQIHRYWARLESSIGNDITAARGVWESLLK
NSGSMLEAWQGYISMETEMGHINEARSLYKRCYSKRFSGTGSEDICNLWIRFEREFGTLE
DFDHASQKVAPRVQELQLFRLQQESKNIASSADHKEDSVKKSTREKRKSASDAPNEQSPA
KRQKNAIGHQKDKPQSSVKANKVENIVTPKDMPHGQDDLKTKDPTPERSKQYRDQCTAFV
SNLNLKANSEDLRSFFSDVGGVEAIRILMDKFTKKSRGLAYVDFSDDAHLEAAVAKNKQM
FLGKKLSIARSDPKSKRKGSAGHKASIEQGVGIYSSSLSLSLSLSLSLM
NT seq
1948 nt
NT seq
+upstream
nt +downstream
nt
catggaacttatggagtggaaatttattggatattgtccgtttctctgtggtatgactat
ctgaatttcattcaaaaatatgattcttctgtccgtgaatgttcacccactgggatctca
aaggcaagggacctgtttgagcgtgctcttatcgcatgtggtttgcatgttgctgaaggc
agtaaattatgggaagcatacaaaagttatgaggaagccgtccttaatagcatggatacg
atggactttgagtcgcgggaaaagcaggtccaaaggattcgaaatatatttcatcgacac
ttgtcgattcctcatcgagacctgatgtcaactcttctcacctataaggcttgggaggct
gaacatgggaacactcttgacgtcagtagtagcagtacagaaggaatttccgccaatgtt
gcttccgcatatcagaaggctatagagatgttgagtatgcgtgctgattttgaagaaaaa
attgtaaaaaatgacatggctgatacagagcggcttcaaagtttcatggcttatttgaaa
ttcgaacagtcctgtggagatcctgctcgagttaaaagcttgtatgaacgtgcaattact
gaatttcctatatccagtgatctctggattgattatacccactacctcaataagacccta
aaggcagacaaaactttgagggatatttttaacagggcaactaggaactgtccctgggtt
ggagaactatgggttcagttcatgctataccttgaacgatgtcgttgttctgagaaagag
ctttctgatgtttttgagagatctctgctatgcacattttctaccatagatgagtatgta
gacatatttctcacaagagttgatggcttgaggaggagaatcttgtttgccaaagaactg
gacgatggcttagattatgccttgatacgggatacttttcagagggcatgtgattatttg
tcaccacagttaaagaacacgtacagtttgttgcaaatacatagatactgggcccgcctg
gagtctagtattgggaatgatataactgcagctcgtggagtatgggagagtttgcttaag
aacagtgggtctatgttagaagcctggcaaggctatatatcaatggaaactgagatgggg
cacataaatgaagctagatctttgtataaacgatgctatagtaaaaggttttctgggaca
ggctctgaggacatatgcaacttatggattaggtttgagagggaatttggtacactggaa
gattttgatcatgcttcacagaaggtggctcctcgggtgcaggagctacagctttttagg
ttacagcaagagagcaaaaatattgcttcatcagcagatcacaaggaggattctgtaaag
aaaagtacacgtgaaaagagaaagtctgcttcagatgcacctaatgaacagtcaccagca
aagcggcaaaagaatgccatagggcatcaaaaggataaacctcaaagttcagttaaagca
aataaagtggaaaatattgttactccaaaagatatgcctcatggccaagatgacctgaaa
accaaagaccccacacctgagagatccaagcaatacagagaccaatgcactgcctttgta
tcaaatcttaatctgaaggcaaattctgaggacctacgtagtttcttcagtgatgttggt
ggcgttgaagctattcgaatattgatggacaagttcacaaaaaaatcaaggggactagca
tacgtggacttctctgatgatgcacaccttgaggcagctgtggctaagaataagcaaatg
tttcttgggaagaaattgagcattgcacgctctgatcctaaaagcaaaagaaaaggatct
gctggtcataaagcttcaatagaacaaggtgtgggcatatactcttcttcactctctctc
tctctctctctctctctctctcttatgt
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