Cynara cardunculus var. scolymus (artichoke): 112505320
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Entry
112505320 CDS
T05604
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav00040
Pentose and glucuronate interconversions
ccav01100
Metabolic pathways
Module
ccav_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112505320
Enzymes [BR:
ccav01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
112505320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Caudo_bapla_N
Motif
Other DBs
NCBI-GeneID:
112505320
NCBI-ProteinID:
XP_024965014
LinkDB
All DBs
Position
Unknown
AA seq
412 aa
AA seq
DB search
MEKANCIKLVISCILTIISISQSQPITDVTTFGAIGDGITDDKLALQDAWNVACSSTGNL
MLPSGNFLVGPTTFRGPCKPKTMVVNVVGTVKAIPRKDWNPEADTWLNFEHVENLIITGP
GQFEGQGDSGWWDCEKTNNCETNPTALGFHHCNGVKLIKVTSKNSPKNHISINACDGAIV
DNVTLIAPKESPNTDGIDISATNGVHVNGGTIQTGDDCIAINGGSSNIHIDGLFCGPGHG
VSVGSLGRNGKTDIVRNVTVINTTFTATQNGARVKTVPGGSGLADDITFSNITMVAVENP
IILTQFYCPHKQCNDIAPVVHVSDVTFXDIHGTSSKPBAINILCSKSPNSCAGITLEQIN
IGAANPAQRVVSNCHNTQVQTIGVVSPPIVCTPASFISMDTVTHEQPSKDII
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggccaattgcataaagcttgtgatttcttgcattctgacgatcatcagtatc
tcacagtctcaacctataactgatgtaactacttttggagctattggagatggcatcacc
gacgataaattggcgttgcaagatgcatggaatgtagcatgcagttcgactggaaatttg
atgytacctagcggaaactttcttgttggaccaacgacctttcgaggtccatgcaaacct
aaaactatggtcgtcaatgtcgtagggactgttaaggcaatacctaggaaagactggaac
cctgaggctgatacttggcttaattttgaacatgtcgaaaaccttattataactgggcct
ggacaattcgaaggtcaaggtgattcaggctggtgggattgtgagaagactaataattgt
gaaacaaatcccacggctttaggatttcaccattgtaatggggttaagctaataaaagta
acctccaaaaatagcccaaaaaaccatatatcgataaatgcttgtgatggagccatagtc
gacaacgtcaccctaatcgcacctaaggagagtccgaacaccgatggcatcgacatttca
gctacaaatggtgttcatgtcaatggtggaaccatccaaacaggtgacgattgcattgcc
atcaatggtggtagctccaacatccacattgatggtctcttttgtggcccgggtcacggc
gtaagtgttggaagccttggaagaaatggcaaaacagatattgtacgtaatgttacagtt
atcaacaccacgttcaccgccactcaaaatggagctcgagtcaaaaccgtaccgggaggg
tcgggtttggcggacgatatcacatttagtaacataacaatggtggccgttgaaaacccc
atcatactcactcaattttactgcccgcataaacaatgcaatgacattgcgcccgtggtt
catgtaagcgatgttaccttcaamgacatccatgggacttcttcgaaacctratgcaatc
aacattttgtgtagcaaaagtcctaatagttgtgcaggcatcacactcgagcagatcaac
ataggagctgccaatccggcgcaaagagttgtatcaaattgccataatacacaagtgcaa
actataggggtcgtgtctcctcctatagtttgcactcctgcaagctttatttcaatggac
acagtaacccatgagcaaccatctaaagacatcatttaa
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