Cynara cardunculus var. scolymus (artichoke): 112505549
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Entry
112505549 CDS
T05604
Name
(RefSeq) trafficking protein particle complex II-specific subunit 130 homolog
KO
K20307
trafficking protein particle complex subunit 10
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccav04131
]
112505549
Membrane trafficking [BR:
ccav04131
]
Endosome - Golgi transport
Tethering complex
TRAPP complex II
112505549
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TRAPPC10_1st
TRAPPC10
Foie-gras_1
NTS_TR130
TPR_1
TPR_2
Motif
Other DBs
NCBI-GeneID:
112505549
NCBI-ProteinID:
XP_024965214
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All DBs
Position
LG 2:67629900..67650464
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AA seq
1249 aa
AA seq
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MANSLARFESIKKSCNRFVIAVEDVSDLWPLVKGGFEERLPFRRAILNNKTRNPVSMDNL
PAEFILTTDPRLRSQFPQEQLSFWFREPYATVILVTCEDLDEFKTILKPRLKSIVQNEEE
WFIVFVSKAAPNNDKAINRAKKVYARLEVDFNSRRRERCCKFDLHGPEATFWDELEPKVL
ECLRNTLDRRIQLYEEEIRKLSEQRFTPTWSFCSFFILKESLAFMFDMAQLHEDSLREYD
ELELCYLETVNNKQRDFGGTDHGDDQAAILDPDNKQLTQIVQDNSFREFEFRQYLFACQA
KLLFKLHRPFEVASRGFSFVISFSEALAQHESILPFCMREVWVLTSCVELVSATAEHYRE
GLVAPEIKKDYYRVRGELYSLCRVKFMRLAYLLGYGSDIERSPVNSASLSMLPWPKPAIW
PTVPSDASSEVLVKEKMILEVTPRIKHYGIQRKPLPLEPSSLLHAANRGGDSLSAGNMFE
VPDGSGSEGQTSPSPNLPSMSMSRTNFAPGNFESSTDSSKRFAELFVAAEHALRRTISDP
DLWKSLSSLEEFEKRYLELTKGAADNYHYSWWKRHGVVLDGQIAAVFFKHGNYDLAAKSY
EKVCALYSGEGWQDLLADVLPNLAECQKILDDQAGYLSSCVRLLSLDKGLFLNKERQAFQ
SEVVRIAHSEMEDPVPLDVSSLITFSGNSGPPMELCAGDPGTLSVTLWSDFPDDIALESL
SLTLTATNNADELVKAIKSSDVTILNPGRNTITLSLPPQKPGSYVLGVLTGQIGHLRFRS
HGFSRGGPADSDDLMSYDKPTRPILKVFKPRSLVDLAAAVSSALLMNEPQWVGIIVKPYG
YSLRGAVFHINAGPGLRIEESCAIEMETYVNAQRKVDGLQDADGDSNNASAVPKEFAQLT
LRNGSIELPDWASNIVSVIWFPVCALSDGLARGTTAGAITSQRASVVDGLRTVALKLEFG
VMHNQIFERTVAVYFTDPFHVSTRVSDEGSDGALLLQAILHSQVKASLTIHDAWLDLQDG
FTHAGRGDGRPTSDCFPLVVPPASRAGILFGISLGTTTTKDEEKVLHPDTVLNIRYEIAG
DRNLGSHTPVSLEPKGPEDDATPLLTFRSALVLQRPVLEPFLAVGFLPLPSDGLRVGKLF
TMKWRLERLKFFEEETASDKSDGVVYEVKANSKNWMIAGRKRGHAPLSTKQGSRIEISIL
CVPLATGYVRPPQLELPNVKRANICCNPAGPHLVCVLPPPLSSSYCIPS
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattccttagctcggtttgagtctatcaagaagtcatgcaatcgcttcgtcatt
gccgttgaagatgtaagtgatttgtggccccttgtcaaggggggatttgaggaacggctt
ccatttagaagagctatattgaacaacaaaacccgtaatcctgtgtctatggataacctg
ccagctgagtttatactgacaacagatccaaggctccgcagccagttccctcaggagcaa
ttgtcgttttggtttcgagaaccatatgcaactgtgattcttgtgacctgcgaggaccta
gatgagttcaagacaatcctaaaaccacgtctgaaatcaattgtgcaaaatgaagaggag
tggttcattgtctttgtgtctaaagctgcacccaataatgacaaagcaatcaacagagcg
aaaaaagtttatgccagacttgaagttgatttcaactcaaggaggagggaaaggtgttgc
aaatttgatctacatggacctgaagcaaccttttgggatgagttggagccaaaagtcctc
gagtgcctcagaaacactcttgataggcgtatccagttatacgaggaggagattcgtaag
ctcagtgaacagcgttttacgccaacttggagcttctgtagttttttcattctgaaggaa
agcctggcattcatgtttgacatggctcaacttcatgaggattcattacgggaatatgat
gaactagagctctgttacttggaaacagttaacaataaacagagggactttggaggaacg
gaccatggagatgatcaagctgcaatactagaccctgacaacaaacaactgacgcagatt
gttcaagataattcctttagggagtttgaattccgacagtacctgtttgcctgtcaagct
aagctgttgttcaagctacaccggccatttgaggttgcatcaaggggattttcctttgtt
attagcttctcagaagcattggctcagcatgagagtattttgcccttctgtatgagggaa
gtttgggtcctaacatcatgtgtggagttagtcagtgcaactgctgagcattacagagag
ggactggtagcaccagagataaaaaaagactattatcgtgtacggggggagttatattct
ctatgccgagttaagtttatgaggcttgcatatttactcgggtatggatctgatatagaa
agaagtccagtcaacagtgcttctcttagcatgctaccttggcctaagccagcaatttgg
cctacagttccctctgatgcttcatctgaggtccttgtgaaagaaaagatgattcttgaa
gttactccaaggatcaagcactatggtattcagaggaaaccattgcctcttgaaccatct
tctcttctgcatgcggctaatcgtggaggagactctctttctgctggaaatatgtttgaa
gtgcctgatggctcaggttcagaaggacaaacgtctccttcacctaacttaccttctatg
tcgatgtcaaggaccaattttgcaccaggaaactttgagagctcgactgattcttccaag
agattcgcagaactttttgtggctgctgagcatgctctccgtaggactatttctgatcct
gatttatggaagtcattatcatctttagaggagtttgagaaaagatatctggagctaaca
aaaggtgctgctgataattatcattattcatggtggaaaagacatggtgttgttcttgat
ggtcaaattgcagctgttttctttaagcatggtaactatgatctagctgcaaagtcatat
gaaaaagtttgtgctctttattctggcgaaggatggcaagatttgttggcggatgtgctt
cctaatttagcagaatgccagaagatacttgatgatcaagctggttacctgtcctcttgt
gtgagattgctttctcttgataagggcttgttcttgaacaaggaacgccaagcttttcag
tcagaagtagttcgtattgcacacagtgaaatggaggatcctgtgcctttagatgtctca
tcgttaataacattctctggcaattcagggccacccatggagctatgtgctggggacccg
ggtaccttgtctgtaactttatggagtgactttcctgatgacattgctcttgaatcactt
agtctcaccttgactgctaccaacaatgctgatgaacttgttaaggcaatcaagagcagt
gatgttactatactgaaccctggtagaaatacgattactctttccttgcccccacagaaa
cctggttcctatgtcttgggggttcttacagggcagattggtcatttacgatttagatct
catggtttctccagaggtgggcctgcagatagtgatgatcttatgagttatgacaagcca
actaggccaattttgaaggtgttcaaaccaaggtcacttgttgatcttgctgcagcagtt
tcatctgcattactaatgaatgagcctcagtgggttgggataatcgtaaaaccatacggt
tactctctcaggggtgctgtttttcacatcaacgctggccctgggttgaggattgaggaa
tcgtgtgccatcgaaatggagacgtatgtcaatgcacaacggaaggtagatgggttgcag
gatgcagatggtgatagcaataatgcttctgctgttcccaaagaatttgctcaacttact
cttaggaatggtagtatagagttaccagattgggcgagcaatatagttagtgttatatgg
tttcccgtgtgtgccctcagtgatgggctagcaagaggaacaactgcaggggcaatcact
tcccaaagagcaagtgttgtggatggcctgaggactgtcgctctgaaacttgaatttggg
gtgatgcataatcagatatttgaaaggaccgtagctgtttatttcaccgacccattccat
gtgagcacacgcgtatcagacgaaggcagtgatggtgctttgcttttgcaggcgatacta
cactcacaggtgaaagcttctttaaccattcatgatgcttggttagatctacaagatggt
tttactcatgctggacggggagatgggagaccaacatctgactgtttccctcttgtagtt
cccccagcatctagagctggaatcttgttcggtatatccctgggaactacaaccactaaa
gatgaagagaaagtgctgcatcctgatacagtattaaatattagatatgaaattgctggg
gatagaaaccttggctctcatacccccgtgtctctggaacccaaaggacccgaggatgat
gccacaccattgttgacattcagaagtgctcttgttttacaacgcccagtgctggaacct
ttcttagcagttggttttcttcctcttccttcagatggtcttagagtcgggaagctattc
acaatgaaatggagactcgaaaggttgaagttttttgaggaggaaacagcttctgataaa
agcgatggagtagtgtatgaagtgaaagcgaattcaaagaattggatgattgccgggagg
aagcgaggccatgcccctctctccacaaagcaaggttcaagaatcgagatttcgatattg
tgcgtaccgctagctaccggatatgttcggcctccacaactggagctgccaaacgtgaag
cgggcgaatatatgctgcaatcctgctggcccccatttggtttgtgtcttgcccccacct
ctcagctcatcttattgcattccatcctga
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