Cynara cardunculus var. scolymus (artichoke): 112505635
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Entry
112505635 CDS
T05604
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
KO
K14411
RNA-binding protein Musashi
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112505635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112505635
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
112505635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
RRM_PARP14_1
Motif
Other DBs
NCBI-GeneID:
112505635
NCBI-ProteinID:
XP_024965282
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All DBs
Position
LG 2:complement(2263919..2267164)
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AA seq
414 aa
AA seq
DB search
MDSDEGKLFIGGIAWDTTEETLSDYFSKYGDVSQTVIMRDKTTGRPRGFGFVVFSDPSVL
DSVLQDRHTIEGRTVEAKRALSREEQQTSRPGGNVGRSSGGTGNYRTKKIFVGGLPSTLT
EEQFRQYFESYGDVTDVVIMFDQNTNRPRGFGFISFDTEDAVDRVLQKTFHELNNKLVEV
KRALPKDANLGGGGGGSGGSRGGGYQGSNAGSFDSQMDGNRFLQQQTAGGGYPAYSGYGQ
PAYGFGGPNSNAGYGGYGNYGVGGYGGPAYGNPTGANSGYVGGNPSALKTAWGGQSPGYG
GTGYGPNVGYGGNVPWNTAGGGAAVSAPMSQSAGGGSGYGSQGYGYGNYGSNDGYNTNPG
GYGGGGGGRFGPGGAPNNMAGGGDQQAAGGGGGNMGSGYNGQTGYSNAGWRSES
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggattcagacgaaggaaagctattcattggaggaatagcatgggataccaccgaggaa
accctcagtgattactttagtaagtatggagatgtctctcagaccgttatcatgcgcgac
aagaccaccggccgtccacgtggattcggatttgtcgttttctcagatccttcggttctc
gattctgttcttcaagataggcacactattgagggacgaactgtggaagctaaacgagct
ttatctagggaagaacaacaaacgtctagacccggaggtaatgttgggaggagctctgga
gggacgggaaattacagaaccaaaaagatattcgttggtggattgccatccaccttgacg
gaggaacaattccgtcagtattttgaaagttacggtgatgtaactgatgtagtaataatg
tttgaccaaaataccaacaggcctcgaggatttggtttcatctcatttgacacagaagat
gctgttgatagagttctccaaaagacctttcacgagctgaacaataagcttgttgaggtg
aaacgggcacttcctaaggatgcaaatcttggtggtggtggtggtggcagcggcggcagc
cgtggtggaggctatcaaggttccaatgctggctcgtttgatagtcaaatggacggtaac
agattcctgcaacagcaaactgctggcggtggctacccagcatattctggctatggtcaa
cccgcttatggctttggagggccaaatagtaatgctggttatggcggatatggaaattat
ggtgtgggtggttatgggggtcctgcatatgggaacccaactggtgcaaactcaggttat
gtaggtggaaatccgagtgctttgaaaaccgcgtggggtggtcagagtcctggttatggt
ggcaccggctatggccccaatgtgggttatggaggtaatgttccttggaatactgctggt
ggtggtgccgcagtttctgcaccaatgagtcaatcagccggtggaggttctgggtatggg
agtcaaggctatggttatggcaactatggcagtaatgatggctacaatactaaccctggt
ggttatggaggtggtggcggagggcggtttgggccaggaggtgccccaaataacatggct
ggcggaggagatcagcaagcagcaggcggtggtggtggcaatatggggagtggctataat
ggacaaaccgggtactctaatgcgggttggagatctgagtcatga
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