Cynara cardunculus var. scolymus (artichoke): 112505683
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Entry
112505683 CDS
T05604
Name
(RefSeq) protein SPA1-RELATED 4-like
KO
K26557
protein SPA1-related 3/4
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
112505683
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccav04121
]
112505683
Ubiquitin system [BR:
ccav04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
112505683
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Pkinase
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_SCAP
WDR90_beta-prop_4th
PK_Tyr_Ser-Thr
WDR54
Nudix_hydro
WD40_like
Motif
Other DBs
NCBI-GeneID:
112505683
NCBI-ProteinID:
XP_024965362
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Position
LG 2:complement(68204157..68211415)
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AA seq
881 aa
AA seq
DB search
MENSSESGWQRSGSSRGLNSSAVSSRNPRIIPASTLRFSGDTDQDSGIVAGRGRIEKTVL
GQSNRFGTQFGYFREDDGAVIRPVELKDVSLRQWLDNTERVVDALECLHIFMQIVEIVNL
AHSQGFVVHNVRPSCFVMSSFNRVSFIESVSCSDSGSDSCEDESNNQSADFMGLCLPLGP
NQLESKLGNQSFRLEKNPRNLPQTASENTWLQSGSENLEASNVDQAEEKKDPFPMKQILQ
METSWYTSPEEAAGAPSSCASDVYRLGVLLFELYCTSSSAEEKNATMSSLRHRVFPPQLL
LKWPKEALFCLWLLHPEPASRPKMDEVLQSEFLNEPRDNLVEREAVIELKEKIEEQELLL
EFLLMLQQRKQESADNLRRTVSFISSDLQEVTKLQISIRRKGGVSSNHGDSPSSFPSANI
SQNDDSVSSGSRKRIRPVTQILNAEISSSLQDEYHPSDTHIRDRENAISRSSRLMRNFKK
LESAYFLTRRRAFKPVAKPLPRNAPMSSDGKGSIVLTERSSANNFLSRERPAEGRQSIWI
NSFLEGLSKYLSFRKLKVKADLKQGDLLNSSNLVCSLGFDRDGEFFATAGVNKKIKVFEY
DSILNENRDIHYPVVEMSSRSKLSSICWNGYIKGQIASSNFDGVVQIWDVTRNQVFMELK
EHERRVWSVDFSLANPTLLASGSDDGSVKLWNINQGVSAGTIKTKANVCCVQFPSDSGNT
LAFGSADHRIYYYDLRNPSMPLFTLVGHNKTVSYVKFVDSSTLVSSSTDNTLKLWDLSEC
TSQILDSPLQSFTGHMNVKNFVGLSVSDGYIATGSETNEVFVYHKIFPMPALSYKFNTTD
PISGDEVDDSEQFISSVCWRSQSSTLVAASSMGNIKVLELV
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggagaattcgtctgaatctggttggcagaggtctggcagctctagggggctgaattct
tcagctgtttctagtagaaaccccagaataattcctgccagcaccttgagattctcgggt
gacacagatcaagattcgggaatcgtagcagggaggggaagaatcgaaaaaacagtattg
ggtcaatcaaatcgttttggaactcagtttggttactttagggaggatgatggtgcggtt
attcgtccagtggaactcaaggatgttagcttaagacagtggttagataacaccgaaaga
gttgttgatgcccttgaatgcttgcacatatttatgcagatagtagaaattgtgaacttg
gcacattcccaagggtttgttgtgcataatgttcgaccatcgtgctttgtcatgtcctcg
tttaatcgtgtatcttttatagaatctgtatcttgctcagattcaggttcggattcttgt
gaggatgaatcaaacaaccagtccgctgactttatgggattgtgtttgcctttgggtcca
aatcaactggaaagtaaactaggcaatcagagtttccgacttgagaaaaatcccagaaac
ttaccccaaacagcatcggagaacacttggctgcaatcaggttctgagaatttagaagct
agtaatgttgaccaagcagaagaaaagaaagatcccttcccaatgaaacaaatattgcaa
atggaaactagttggtacacgagtccagaggaggctgctggtgctccaagttcttgtgct
tctgatgtttatcgactaggggttcttctttttgagttatattgcacaagtagttcagca
gaagaaaagaatgcaactatgtctagcctgagacatcgtgtctttcctcctcagttatta
ttgaagtggcctaaagaagccttattttgcttgtggttactgcatcctgagcctgctagt
aggccaaaaatggatgaagtgctgcaaagtgaatttcttaatgaacctagagataactta
gttgagcgagaagcagtaatcgagcttaaagaaaagatcgaagagcaggagttgttgctg
gaatttcttttaatgctgcaacaacgaaagcaggaatctgcggacaatttgcgcaggaca
gtttcatttatatcttcggatttacaggaggttacgaaattgcagatatctattcggaga
aaaggaggtgtgagttcaaatcatggagattcaccttcaagttttccatccgcaaatatc
tctcagaacgatgattccgttagctccggatctagaaaacgaatcagacccgtaacccag
atccttaatgcagaaatatccagtagtcttcaagatgagtatcacccatcagatacacac
attagagatagagaaaatgctatctctagaagttctcgactcatgaggaacttcaagaaa
ctagaatccgcctactttttgactaggcgtagggcgttcaaaccggtagccaaaccgttg
cctagaaatgcaccaatgagtagtgatggtaaaggatctattgttcttacagaaagaagt
tctgctaataattttctgtcgagagagcggcctgcagaaggtaggcaaagtatatggatc
aactcgttcttggaggggttgtccaaatatttgtcttttaggaagttgaaagttaaggca
gacttaaaacaaggagatcttttgaattcttccaatcttgtatgctcgttgggttttgat
cgtgatggagaattctttgcaacggccggtgtaaataagaaaattaaagtttttgagtat
gattcgattctgaacgagaatcgtgacatacattaccctgttgttgaaatgtcaagtaga
tcaaagctaagcagtatatgttggaatggatacatcaaaggccagattgcttcaagtaat
ttcgatggtgtagtacagatatgggatgttacacgaaatcaagtatttatggaattaaaa
gagcacgagagacgtgtgtggtctgtggacttctctttggcaaatccgacgttgttggcc
agcgggagtgatgatggttccgttaagctctggaatatcaatcagggagtgagtgctggt
accattaagacaaaggccaacgtctgctgtgttcagttcccgtctgattctggcaatacc
ttagcatttggttcagctgatcatcgaatttattactatgatcttcgcaatccgagcatg
ccactttttacgttagttggacacaacaaaactgttagctacgtcaaattcgtggattca
tcaactcttgtgtcttcatccacggataacacgctgaagctttgggatttgtcagagtgc
acatcccaaattctggactctccgcttcagtcattcacgggccatatgaatgtaaagaac
tttgttggtttatcggtatctgatggttacattgctactggttcagaaacaaacgaggtt
tttgtgtatcacaaaatatttcccatgcctgcattgtcgtataaattcaacaccacagat
ccgatatcaggagatgaagtggacgactctgaacagttcatctcatcggtgtgttggcgt
agtcaatcctctactttggttgctgcaagttccatgggaaatatcaaggtcttggagtta
gtctaa
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