Cynara cardunculus var. scolymus (artichoke): 112505747
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Entry
112505747 CDS
T05604
Name
(RefSeq) DNA polymerase lambda isoform X1
KO
K03512
DNA polymerase lambda [EC:
2.7.7.7
4.2.99.-]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03410
Base excision repair
ccav03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
112505747
03450 Non-homologous end-joining
112505747
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112505747
Enzymes [BR:
ccav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
112505747
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
112505747
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
112505747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_B_thumb
DNA_pol_lambd_f
HHH_8
HHH_5
NTP_transf_2
Motif
Other DBs
NCBI-GeneID:
112505747
NCBI-ProteinID:
XP_024965470
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All DBs
Position
LG 2:30365445..30397606
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AA seq
570 aa
AA seq
DB search
MAPKASKNRYPSPDPHGIFSGMVVFLCDDGVQRRRLQVLVFSFCCLDVCIALCWMMFDFL
VKIWKQKLVQMGAIVEEEALSRNVTHVFAVNSDSLRRKLGPKLLQRFEGTILFYQWLEDS
LRLGEKVSEESYTIQLGSCQSPPKNSPNENSVESADVKISSDNELHLYKKLKPSSMNSES
SSPEMKDKSLSNSVDVVPHTAYSSKNSLYPRRPSSISPVTSNAQQSTVGAPDASLPYHPP
DLNRNITEMFGKLINIYRALGDDRRSFSYYKAIPIIERLPFKIESVDQVKDLPAIGKSMQ
DHIHEIVTTGKLSKLEHFESDEKVRTISLFGEVWGIGPATALKLYERGHRSLDDLKSDDT
LTNSQRLGLKYFEDIRTRIPRDEVQEMEHLLQNAAEDVLPGVNVVCGGSFRRGKATCGDM
DIVITHPDGESHIGFLPKYVNHLKDMNFLREDLVFSIHSEQGTDSGVDTYFGLCTYPGRE
LRHRIDLKVYPKDIYPFGLIAWTGNDVLNRRLRILAESKGFRLDDTGLFPATHGSGGKRV
SASTSLKFNSEKEVFDFLGFPWLEPHERNI
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccaaggctagcaagaatcgttatccatcgccggatcctcatggaatcttctcc
ggaatggtcgtcttcctctgtgacgatggcgttcagagacgtcgattacaggttttggtc
ttctctttttgctgtttagatgtatgcatcgcgttatgttggatgatgtttgattttctc
gtgaagatatggaagcaaaagctagtgcagatgggagcaatcgtggaagaagaagctttg
tcccggaatgtgactcatgtttttgcggttaattccgactcacttcgccggaaattgggt
cccaaactattgcagcgcttcgaagggactattcttttttatcagtggctggaggacagc
ttgagactaggagagaaagttagcgaggaatcatacactatacagttgggttcatgccaa
agtcctccaaaaaactcacctaatgagaactctgttgaatctgctgatgtgaaaatatct
agtgacaacgagttacacctgtataaaaagctgaaaccctcatccatgaactcagaaagt
tccagtccagaaatgaaggataagtcattgagcaactcagttgatgttgttcctcacaca
gcttatagttctaagaacagcttgtaccctcgaaggccttcaagcattagcccagtcact
tctaatgctcaacagagtactgtcggtgcaccagatgcttccttgccatatcaccctcct
gatttaaatagaaatattaccgaaatgtttggcaaactaatcaatatatatagagctttg
ggtgatgaccgacggtccttcagctattacaaggcaattccaattattgaaaggttgccc
tttaaaattgaaagtgtggatcaagtcaaagacttgccagctattgggaagtcgatgcag
gatcatatacatgagatcgtgacgactgggaaattgtccaagttggaacacttcgagagt
gatgaaaaggtacgaacaatcagcttgtttggggaagtatggggcattggtccagccacc
gcattgaaactatatgaaagaggacacagaagtcttgatgatttaaaaagtgacgataca
ctgacaaattcacaacggctagggttgaagtattttgaagatattagaacaaggataccc
cgtgatgaggtgcaagagatggagcacttgctacaaaatgctgcagaagatgttttacct
ggagtgaatgttgtatgtggaggatcattcagacgtggaaaggctacttgtggggatatg
gatattgtgattacacatcctgatggagaaagccatataggttttctgccaaagtatgta
aaccatttgaaagatatgaactttttaagagaggatttggtcttcagtattcacagtgag
cagggtactgattcaggggttgatacatacttcggtctttgcacatatcctggtcgggag
ctgcggcatcgcattgatttgaaggtgtacccgaaagatatatacccttttgggctaata
gcatggacggggaacgatgtgctgaacagaaggctgaggatacttgcagaatccaaagga
ttccgacttgatgatacagggttgttccctgcaactcatggttccggtggaaaaagggtt
agtgccagtacaagtttgaagtttaactcggaaaaggaagtattcgacttcctgggattt
ccatggcttgaaccacatgaacggaatatctga
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