KEGG   Cynara cardunculus var. scolymus (artichoke): 112505752
Entry
112505752         CDS       T05604                                 
Name
(RefSeq) protein SPIRRIG-like isoform X1
  KO
K22262  WD repeat and FYVE domain-containing protein 3
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ccav04131]
    112505752
Membrane trafficking [BR:ccav04131]
 Autophagy
  Aggrephagy
   Scaffold proteins
    112505752
SSDB
Motif
Pfam: Beach WD40 NBCH_WD40 PH_BEACH Beta-prop_EML WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd Laminin_G_3 Arm_4 Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WDR55 Beta-prop_IFT140_1st DUF4704 Beta-prop_WDR35_TULP_N Beta-prop_HPS5 EIF3I VPS8_N Beta-prop_TEP1_C
Other DBs
NCBI-GeneID: 112505752
NCBI-ProteinID: XP_024965480
LinkDB
Position
LG 2:1523685..1554597
AA seq 3122 aa
MDMQDEKGRGDTSSQSLSPTLSRLLDVLVNLAQTGSTDVIGSPGSKGTKNHVNAGGRSQS
LSSDRFSDDVWEKDNYKVKDLEAVQVLQDIFLKADSSELQSEVLNRMFKIFSGHLENYML
CQQLRTVPLLILNMGGFPPPLQETILKILEYAVTVVNCIPEQELLSLCCLLQQPITSELK
HTILAFFVKLVSFDQQYKKFLREVGVLEVLLDDLKQHRFLVGPDQQNNDNTGKLDRKSSP
NGFKKHLDVAWDCLVSLLRKAEHNQVKFRSADGVTTALPFLASDDHRPGVLRVLSCLIIE
DSVQAHPDELGSLVEISKSGMVISTLGSQYKLRDDAKCDILGAIWRILGANSSSQRVFGE
ATGFALILTTLNGFQGDKEQIRQSSLTVCIKVFTYLVRVITAGVCNNAVNRVKLHVIISS
QSFCDLLSESGLICVECEKQVMQLLFELALEIVLPPSFTPETTEPSDDRGDVFAFRIVTP
ASCIPDKQRIYNAGALWVLIRLLLLFSPKLQLEFLKLIEILALAGSFNQESLTSAGCVEL
LLETIYPFLSGSSPLLSHALRIIEVLGAYRLSSAELRVIVRYILQVRQMKSSHILIDTME
RLILMENTASENIPLAPFVEMDMSKSGHASIQVPLGERSWPPAAGYSFVCWFQFRNLLKS
DIKESESSEAGFSKRHTSTTGPQVMRIFSVGDTDGGNNFYAEVYLQEDGTLTLATSNSSS
LSFSGLDIDEYRWHHLAVVHSKPSTLAGLFQASVSHVYLNGKLRQTGKLGYSPSPAGKSL
QVTIGTPVSCARVNDISWKIRSCYLFEEALTPGSICFIHILGRGYRGLFQDTNLLQFVPN
QACGGGSMAILDSLETDLVLASNTQRPDANKQMSSKADRSGIVWDLERLWNLSLQLSGRK
LIFSFDGTSTEAFEACGTLSMLNLVDPLSAAASPIGGIPRFGRLHGDIYVCKHSIIGETM
RPIGGIAIVLALVEAAETRDMLHMVLTLLACALHQNPLNVKDMQSYRGYHLLALLLRPKM
SIFDMHSLEIFFQIAACDASFPGPNKLEKTNNLSPVVTNVHEASFEDLNMSKFNDEASSV
GSPGDMDDFSVNKDAFSHISELDNGDLSTETSNCMVLSNADMVEHVLLDWTVWVAASVPI
QISLLGFLENLVSTHWYRNHNLTILRRINLVQHLLVTLQRGDVEVPVLEKLVMLLGVILE
DGFVISELEHVVRFVIMTFDPPQLTSRSQILRESMGKHIIVRNVLLEMLIDLLVTIKSDE
LLEQWHKVVSSKLITYFFDEAVHPTSMRWVMTLLGVCLTSSPTFSLKFRTSGGYQGLVRV
LPSFYDTPDIYYILFCLIFGKAVYPRVPEVRLLDFHALMPSDGSHPELKFLELLDSVIAM
AKSTFDRLSLQLMLAYESGDLNQVDAGIVAELVNGNTEMTGELQGEALMHKTYAARLMGG
DASAPAAATSVLRFMVDLAKMCPQFSSVCRRAEFLEHCVDLHFSCVRSAHAVKMAKKLSV
KSEDKNLNDSDDTTSSHNSLPLEQEQCEKTSISLGTSPPQHASTSSEDIPVATSNLDEYK
ANDVTLSPQESHKSVGEVDQVSAVISDGKDFGSHDLKITPEPVRQTSSLSSISLNIFDST
GVQQIPTSSQILATSSWQNASVNESKPKLAASPSMASSISMSVSLSEFDTASDPKCTSRV
PNATDTNFSINPGMLLDADDSGYGGGPCSAGATAVLDFMAEVLSDSVTDQMKAAIVIENI
LESVPLYVDAESLLVFQGLCLSRLMNFLERRILRDDEEDEKKLDKTRWSSNLDALCWMIV
DRVYMGAFPEPASVLKTLEFLLSMLQLANKDGRIEQAAPPGKGLLSIGRAKQLDAYILAM
FKNMNRTIMYCFLPSFLISVGEDELLSHLGLQIETKKRVVLNASQEDGVIDICTVLQLLV
AHKRIIFCPSNFDNDLNCCLCINLISLLHDQRQNAQNLAVDVLKHLLVHRKTALEDLLVS
KHNQGPVLDALHGGFDKLLTGSTPSFFEWLQTSELLVSKTLEQGAAIMWVQYIAGSVKFP
GVRIKGMDGRRKKEMSRKSKESRKLDQRHWDQIKERRIALELVCDQMSTELGVVRQDKYG
WVLHAESEWQMHLQQLVHERGIFPLRKSVLIEEPEWQLCPIEGPYRMRKKIERCKLKADT
IETILSGEFEGGELYIEKNEVDSSNCGCESGPFSNLLPYVGKQESDDEEVFGDSMFKESD
GVKDVSSSRVGWNDDKDSSIFEASIHSAATFSVKSSSVAAPKSESVIEKSDVGSLRRYAS
VRSDNVRLMEDKLDRESSDNGKYLIRPYLERNEKIKLRYNCERVVSLDKHDGIFLIGELC
LYVIENFYIDDSGCICEKECEDDLSVIDQALGVKKDTSIRVYSHSKSTTSAYTGGRAWAY
SSGAWSEENAASSNNVPHLWRMWKLNSVHEILKRDYQLRPVAVEIFSMDGCNDLLVFHKK
EREEVFRNLLALNLPRNSMLDTTISGSVKQESTFKIMAKSFSKRWQNGEISNFQYLMHLN
TLAGRGYSDLTQYPVFPWILSDYENENLDFTKPETFRRLDKPMGCQTIEGEQEFRKRYDS
WDDPEIPKFHYGSHYSSAGIVLFYLIRLPPFSTENQKLQGGQFDHADRLFNNIRDTWSSA
AGKSNTSDVKELVPEFFYMPEFLENRFDLDLGEKQSGEKIGDVGLPPWAKGSTREFIKKH
REALESDYVSENLHHWIDLIFGYKQRGKAAAEAVNVFYHYTYEGSVDIDAVADPGMKAAI
LAQINHFGQTPKQLFQRPHVKRRTDRKPPLNPLKLSARLSPHEIRKIESSIAQIVTINDK
ILMVGTNNFIKPRTYAKYVSWGFPDRSLRFMSYDQDRLLSTHENLHGGHQIQCASGSHDG
QLLVTGADDGLVCVWRIGAYGGPRAPRRLTLKQALCAHTAKVTRLYVCQQYMTIISGSED
CTVIIWDLSSLVFLRQLPEFPFPISAVYMNDLTGEIVTAAGILLAVWSINGDCISVVNTS
QLPSDIILSVTTCTFSDWLETNWYVSGHQSGDIKVWQMVHSSFEIAKTQKHPSANVHCGL
GLNGKLPEYTLLLHKVLKGHKDSVTALHLSSDMKLLLSGDSGGHLFSWTFPDETLRNSVK
RG
NT seq 9369 nt   +upstreamnt  +downstreamnt
atggacatgcaggacgaaaagggaagaggggacacctcatcacaatccctctcgcccaca
ctttctaggctgcttgatgttcttgttaatctagctcaaacaggctcaacggacgtgatt
gggtcgcccggctcaaagggtacaaaaaatcatgtaaatgctggtggcaggagtcaatct
ttgtcatctgaccggttcagtgatgatgtttgggagaaggacaattacaaagttaaggac
ttagaagctgtccaagtgctgcaggacatttttctcaaagcagatagtagcgaacttcag
tccgaggtgctgaatagaatgttcaagatattctcgggtcatctcgaaaactacatgttg
tgtcagcaattgcgaacggtacccttgttgatcctcaatatgggtggcttcccgcctcct
ttgcaagaaactatcttaaagattcttgagtatgccgtgactgttgtaaattgcatacct
gagcaagagttgctttcgctttgctgcttgttgcaacaaccaataacatctgagttgaag
cacactatcctggcgttctttgtaaagctggtgtcttttgatcaacagtacaaaaagttc
ctacgagaagttggtgtgctggaggttttattagatgatctcaagcagcacaggtttctt
gtgggcccagatcagcagaacaacgataacactggcaagctggacaggaagtccagcccg
aatggtttcaagaaacatctggacgttgcttgggactgtttggtttcattattgagaaaa
gctgaacataatcaagtgaagttccgttccgctgatggtgtaactactgcgcttcctttt
ttggcatctgatgatcaccgtcctggtgtcctccgggtattatcatgcttaatcatcgag
gattctgtacaggctcatcctgatgaattgggctcactggttgagatttcaaagagtggg
atggtgatcagcactttgggatctcaatacaagcttcgagatgatgcaaaatgtgatatt
ttaggagccatatggcgaattttaggagccaacagttcttctcagagagtgtttggtgaa
gccaccgggtttgctcttattcttactacacttaacggtttccaaggagataaagagcaa
attcgccaatcctccttaacagtttgcatcaaagttttcacatatctggtacgcgtaatc
actgctggagtatgcaacaatgccgttaatagagtaaagctacatgtgattatatcttca
caaagtttttgtgatcttttatccgagtctggattgatctgtgtggagtgtgaaaagcaa
gtcatgcagctgctgtttgaacttgctcttgagattgtgcttccaccgtccttcacacca
gaaactacagaaccatcagatgatcgtggcgatgtctttgctttccggatagttactcca
gcttcgtgcattcctgataagcagcgtatatataatgctggtgcactgtgggttctcatc
cgtttgttgttgctttttagtccaaaacttcagctggagtttctaaaacttattgaaata
cttgctcttgctggctcttttaaccaggaaagccttacatctgcaggttgtgtggaactt
cttcttgagacaatatatcccttcctttctgggtcatcccctctactatcccatgcttta
aggattattgaagtacttggggcttataggttgtcatcagcagaactacgggtgattgta
agatatattttgcaagtgagacagatgaaatctagtcatatccttattgatacgatggag
aggttaatcctaatggaaaatacggcttcagaaaacattcctcttgcaccatttgtagag
atggatatgagcaaatctgggcatgcttctatccaagtaccattgggtgagagatcatgg
cccccggctgctgggtattcattcgtttgttggtttcaatttcgaaatttgttgaaatca
gacatcaaagaatcagaatcttccgaggctggattttctaaaagacatacaagcacaaca
ggtccacaagtcatgcgcatattctccgttggtgataccgatgggggtaataacttctat
gcagaagtttatcttcaagaagatggaactttaacccttgcaaccagcaattcgtcttcc
ttatctttttcgggtttagatatagatgaataccgatggcatcatcttgctgtggtgcat
agcaaaccgagtaccttggctggactattccaagctagtgtttcccatgtctatcttaac
ggaaagcttagacaaacgggaaaactaggatactctccctcccctgctggcaaatctttg
caggtaaccatcgggacacctgtttcttgtgcaagggtcaatgacatatcgtggaaaatc
cggtcttgctatctatttgaagaagctttgacaccagggtctatttgttttatccatatt
ctgggcagagggtataggggcctttttcaagataccaaccttttgcaatttgtcccaaac
caggcttgtggtggtggaagtatggccatcttagattcccttgaaactgatttggtgttg
gcttctaacacgcagagacctgatgctaataaacaaatgagctctaaggcggatcgcagt
ggcattgtgtgggatcttgaaagattatggaatctttccctacagctttctggacgaaag
ctaatattttcatttgatgggacatctacagaagcttttgaagcatgtggaactttgtcg
atgctcaatttagttgatccattgtcagcggctgcttctccaattggaggtataccacgc
tttgggcgtcttcatggggatatttatgtatgtaagcattctataataggtgaaaccatg
cgccccatcggtggaattgccattgtgttagccctggttgaagcagccgaaaccagagac
atgctacatatggtgctgacactgcttgcttgtgcacttcaccaaaatccactgaatgtt
aaagacatgcaatcgtatagaggatatcacttgctagcactccttttgcgtcctaaaatg
tcaatatttgatatgcattcactcgagatctttttccagattgctgcttgtgatgcttct
tttcctggaccaaataagttggaaaaaactaataatctgtcacctgttgtcacaaatgtc
catgaagccagctttgaggatcttaatatgtcgaagtttaacgatgaagcttcgtcagtt
ggttcaccaggagacatggatgatttttctgtgaataaggatgcgttcagtcatatctca
gaactcgataatggtgatttgtcaaccgaaacatcaaactgcatggttctttcaaatgca
gatatggttgaacacgtgttattggattggactgtttgggtagcggcatcagttccaata
caaatttctcttctgggatttctcgagaatctcgtttcgacgcattggtaccggaatcat
aatcttacaattttgcgtaggataaacctcgttcaacatctattagtgacactacaaagg
ggtgacgttgaagttcctgtactagaaaaattagtcatgctgctaggggtaattttggaa
gatgggtttgtcatttctgaactggaacatgttgttcggtttgtgattatgacgtttgat
cctccacaactgacatcaaggagtcagatacttagagagtcaatggggaagcacattatc
gttagaaatgtgcttcttgagatgctaattgatcttttagtgaccattaaatcagacgag
cttcttgagcagtggcataaggttgtttcatccaagttgataacgtatttttttgacgaa
gctgttcatcctactagtatgagatgggtcatgactcttctcggtgtgtgtcttacctct
tctcctactttttctctcaaatttcgcacaagcggaggatatcaaggattggtgagggtg
cttcctagtttctacgacactcccgatatatattacattctgttttgtcttatatttggc
aaggccgtttatccaagagtacccgaagttcgtttgttggactttcacgcccttatgcca
agtgatggaagtcatccggagttgaaatttctagaactgttggattccgtgattgctatg
gcgaaatctacatttgatcggttgtccctccagctaatgcttgcctatgaaagtggcgat
ctgaatcaggttgatgctgggatcgtggcggagcttgtgaatggaaatacagagatgact
ggagagcttcagggagaagctctgatgcacaaaacttacgctgcccgtctcatgggtgga
gatgcttcggcccctgctgctgcaacttccgtccttaggttcatggttgatttagccaaa
atgtgtcctcagttttcttctgtgtgcagacgagctgaatttcttgagcactgtgtggat
cttcatttctcttgtgtcaggtcagctcatgctgtgaagatggcaaaaaaattgtccgtg
aagtcagaagacaaaaatctgaatgattcagatgatacgactagttctcacaatagcctc
ccacttgagcaggaacagtgtgaaaaaacctccataagtctcggaacttcccctccacaa
catgcaagtacaagttccgaagatattcccgttgccacaagcaatttggatgaatataag
gcaaatgatgtaaccttatccccacaggaatcacacaagtcagtcggagaagttgatcag
gtttctgctgtgatatctgacggtaaagatttcggttcccatgatctcaaaatcactccg
gagcctgttcgccaaactagttcactaagttccatatctttaaatatatttgattccacc
ggggttcagcaaatacccacgtcatcacaaattcttgcaacgagttcatggcagaatgct
agtgtcaatgaatcaaaacccaagttagctgcctctccttccatggcatcttctatatct
atgtctgtatctttgtctgagtttgatacagcttcagacccgaaatgcacttcccgagtc
ccaaatgccacagacacgaatttctcaattaacccaggaatgcttcttgatgcggatgat
tctggttacggaggtggtccttgttcagcaggagcaactgccgttttagattttatggct
gaagttctttctgattctgtaaccgaccagatgaaagctgcaatcgttatagagaacatt
ttggaaagcgttccgttgtatgttgatgctgaatctctcttggttttccagggtttatgt
cttagtcgactgatgaactttcttgaaaggcggatcttgcgtgatgatgaggaagacgag
aagaaacttgataaaacacggtggtcatcgaatttagacgctttgtgttggatgatagtt
gatcgtgtatatatgggtgcttttcccgagcctgcttctgtactcaagactttggaattc
ttgttgtcgatgttgcagctggcaaataaggacggtagaatcgaacaagcagctccaccc
ggaaaaggactcctgtctattggtagagcgaagcaactcgatgcatacatacttgcaatg
tttaagaatatgaatcgtaccattatgtactgttttcttccatcgttcttgatctccgtt
ggagaagatgaacttctttcacatctcggtttgcaaatcgagacaaagaagagagtggtt
cttaatgcatcacaagaggacggagtgatagatatttgcacggtgttacagctacttgtt
gctcataaacgaataatattctgcccaagtaactttgacaacgatctaaattgctgcctg
tgtataaatttaatatctcttctacatgatcagcggcagaatgcacagaatttggcagtt
gacgttctcaagcatcttctagtgcatcgtaaaacggcactcgaggacctgctcgtctcc
aaacacaaccaaggaccggttttggatgctttacatggcggatttgataaacttcttact
ggaagtacaccatctttctttgaatggcttcaaacttctgaacttcttgttagtaaaacg
ttggaacagggtgctgcaattatgtgggttcagtatattgctgggtcggtaaagtttccg
ggagtgcgaatcaaaggtatggatggtcgtcgtaagaaagagatgagtagaaaatcgaag
gaatcaagaaagttggaccaaagacattgggatcaaattaaggaacggagaattgcattg
gaattggtctgtgatcagatgtctactgaattgggggttgttcgtcaagataagtatgga
tgggtacttcatgctgaaagtgagtggcaaatgcatcttcaacaacttgtacacgagcga
ggtatattcccgttgcgtaagtcggttttaatcgaagagcctgaatggcagctttgcccg
attgaaggcccgtatagaatgcggaaaaagatcgagcgttgcaaactgaaagcagatacg
attgaaactattttaagtggggagtttgaaggtggggaattatacattgagaaaaatgaa
gttgactcgagtaattgtggttgtgagtcgggtcctttctcaaatcttttgccgtatgtc
ggaaaacaggaatccgatgacgaagaggtgtttggtgattcgatgtttaaagaatcagat
ggtgtaaaagatgtcagttccagtcgggtcggatggaatgatgataaagatagtagtatt
tttgaggcaagtattcattcagctgctacatttagtgttaagtcgagttcagtagctgca
ccaaaatcagagagcgtaatagaaaaatccgatgttggttctcttagaaggtacgcttca
gtaaggtccgacaacgttagattgatggaggacaaactggatcgggaatcgagtgacaac
gggaagtacttgattagaccgtatctagaacgtaatgagaaaatcaaattgagatataat
tgtgaacgagttgtgtctcttgataaacatgacggtatttttctgataggagaactctgc
ctttacgttatagagaacttctatatcgatgattcagggtgcatctgtgaaaaggaatgt
gaagacgatctttcggttattgaccaagctttaggtgtaaagaaggatacgtctataagg
gtgtactcccattcgaagtcaaccacatccgcgtacaccgggggcagagcatgggcatac
agtagtggtgcatggagtgaggaaaacgccgctagcagtaacaatgtacctcatctatgg
cgaatgtggaagcttaatagcgtccatgaaattttgaagcgggattaccagctgcgtcct
gttgctgttgaaatattcagcatggatggatgtaacgatcttttggttttccataaaaag
gagagggaggaagttttccgaaatctgctggcattgaatcttccaagaaacagcatgttg
gacaccacaatatcgggatcggttaaacaagaaagcactttcaagattatggctaaatcc
ttctccaagaggtggcaaaatggagaaattagcaacttccagtaccttatgcacctcaac
acacttgcgggtcgtgggtacagtgatcttactcagtatcctgtcttcccttggattttg
tcagattatgagaacgaaaatttggacttcaccaaaccagaaacattccgtagacttgac
aagcccatgggctgtcaaacaatagagggggagcaggagttcaggaaaaggtatgacagc
tgggatgatcctgagattcccaaatttcattacggttctcactattcgagtgctggaatc
gtcctcttctatcttatacgcttgccaccatttagtacagaaaatcaaaagctgcagggt
gggcagtttgatcatgctgaccggcttttcaataacatacgtgatacatggtcaagtgca
gctggaaaaagcaacacctcagatgtaaaggaattggtcccggaattcttttatatgcca
gagttcttggaaaaccgttttgatcttgatcttggggagaaacaatcaggagaaaagatt
ggagatgttggattgcctccttgggcaaaaggtagtactagagagttcatcaagaagcat
agggaagctctggaatctgattatgtttcggagaatttacatcactggatcgatcttatt
ttcggttacaaacaacgagggaaggcggctgcggaagctgtaaacgttttctaccactac
acatatgaggggagtgtcgatatagatgcagttgcagatcccggaatgaaagcagcgatt
cttgctcaaattaatcactttggccaaacaccgaagcaacttttccaaaggccgcacgtg
aagaggaggacggataggaagccgccccttaatccgcttaagttatccgcacgtcttagc
ccacacgagattcgtaagattgaatcttctatagcgcaaattgttaccattaacgacaag
attttaatggtgggcacaaacaactttatcaaaccgaggacctacgccaagtatgtttcg
tggggtttccccgatcgtagcttgaggttcatgagctacgatcaagatcggcttttgtcg
acccatgaaaaccttcacggaggccaccagatccagtgtgcgagtggtagccacgatggt
caacttctggtcaccggtgccgatgatgggttggtttgcgtttggcggataggagcctac
ggtggaccccgtgcaccacgaagattgaccttgaaacaagccctttgtgctcacacggct
aaagtcacccgtctttacgtttgccagcagtacatgacgattataagtggttcagaagac
tgcaccgtcatcatatgggatctcagctctttggtttttctccgacagcttcccgagttc
ccgtttccgatttcggctgtatacatgaacgacttgaccggcgaaatcgtgactgcggca
ggcattttgcttgcagtttggagcataaacggagactgcatctccgttgtcaacacatct
caactaccatccgatattatcttgtctgtaacgacttgtacgttctccgattggctcgaa
acgaactggtacgtatcgggtcaccaaagtggagatattaaggtatggcaaatggttcac
agttcttttgaaattgctaaaactcaaaaacatccttctgcaaatgtgcattgtgggtta
ggtctcaatggtaaattaccagaatacacattattgctacataaagtactcaagggccat
aaggattcagtcactgcacttcatctttcaagtgatatgaagttattgttgagtggtgat
tctggtggccatttgttctcatggacatttccagatgaaactttgagaaattcagttaaa
cgggggtga

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