Cynara cardunculus var. scolymus (artichoke): 112505801
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Entry
112505801 CDS
T05604
Name
(RefSeq) protein RAE1
KO
K14298
mRNA export factor
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112505801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112505801
03036 Chromosome and associated proteins [BR:
ccav03036
]
112505801
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112505801
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
112505801
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
EIF3I
ANAPC4_WD40
Beta-prop_SPT8
Beta-prop_TEP1_C
Beta-prop_DCAF12
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
112505801
NCBI-ProteinID:
XP_024965570
LinkDB
All DBs
Position
LG 2:complement(60901857..60910706)
Genome browser
AA seq
349 aa
AA seq
DB search
MSAFGIGSAANTNPNKSTEVVSPPTDAVSSLSFSPKANYLVATSWDNQVRCWEITKSGTS
VGSVGKASIAHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPVKEV
AWIPEMNLLVSGSWDKTLRYWDLRQSNPVHTQQLPERCYALTVRHPLMVVGTADRNLIVF
NLQNPQAEFKRIPSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDEQQQSKNFTFKCH
REGNDIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCNQPIPCSSFNYDG
SVFAYAVCYDWGKGAENHNPATAKTYIYLHLPQESEVKGKPRIGTSGRK
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcttttggcattggttctgctgccaatacgaatccaaacaagtcaactgaggtt
gtatcacctcctacagatgctgtatcaagcctttctttcagtcccaaggcgaattacctt
gttgctacttcatgggataaccaggtgagatgttgggagataacaaaaagtggaacttct
gttggttctgtgggaaaggcatcaatagcacatgaccaaccggttttatgttcagcttgg
aaggatgacggaacaacagtcttctctggaggatgtgacaaacaagtgaagatgtggccg
ttactttctggtggccaaccagtaactgtggccatgcatgatgctcctgtaaaggaagtt
gcttggattccggagatgaaccttttggtatcgggaagctgggataagactttaagatac
tgggacttgagacaatcaaatccagttcacactcagcaacttcctgagcgctgctatgcc
cttacagtgagacatcccctgatggttgttggcactgcagatagaaaccttatagtattc
aacttgcagaatcctcaggctgagtttaagagaatcccctcccccctaaagtaccaaact
aggtgtgttgctgcctttccggatcagcaaggtttcttggttgggtcaatcgaagggaga
gttggtgtacatcatcttgatgaacaacagcaaagtaaaaacttcacttttaaatgtcac
agagaaggaaatgatatatactcagtcaattctcttaattttcatcccgttcatcacaca
tttgcaactgctggatctgatggtgcttttaacttctgggacaaagacagcaaacaaaga
ttgaaggccatgtcaaggtgcaatcaacctataccttgcagtagcttcaactatgatggc
tccgtatttgcttatgcggtatgctatgattggggaaaaggtgcagaaaaccataatcca
gcaacagctaagacctatatttacctgcacttacctcaggagtcagaggttaaaggcaaa
cctcgaatcggaaccagtggaaggaagtga
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