Cynara cardunculus var. scolymus (artichoke): 112505827
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Entry
112505827 CDS
T05604
Name
(RefSeq) DNA mismatch repair protein MSH6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
112505827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112505827
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
112505827
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_I
MutS_III
MutS_IV
MutS_II
PTM_DIR17_Tudor
Motif
Other DBs
NCBI-GeneID:
112505827
NCBI-ProteinID:
XP_024965614
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Position
LG 2:190034..199184
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AA seq
1256 aa
AA seq
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MAFRRPSNGRSPLVNPQRQITSFFSKSPSSTSSTSPLLSNSKPKPKPKPTPTTPSPPLTK
RTNNPPLLLTPNPIHGHELVDRRIRVYWPLDKTWYEGRVTSFHKTSGKHLVQYDDAEEEL
LDLSKEKIELLNDHPKRFRRLRRFSIQDQDDDAGGPGQGNVDKNAESGGDDSADEDWGIH
VEKEVIGDETDDLDLVDEDEENTVAVKPDLKKRKSSGMKLDSAKKIKTESFMDLSRASLE
PINNINNNFASGKTSAFVDNVLVGDKAERFTTREEEKFKFIGKDRRDAKKRSPGDENYDP
RTLYLPPHFLKSLTGGQRQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMK
GDQPHCGFPEKNFALNVGKLACKGYRVLVVEQTETPDQLERRNKEHGSKDKVVKREICAV
ITKGTLTDGEMLSANPDASYLFAVSECYQPSGKQHDDRVYGVCVVDVATGKIIIGQFEDD
LECSVLSCLLSQLRPVEIIKPIKLLSPETERVLLRQTRSPVVNELVPLEEFWDAEKTICE
IKEIYQRISNQSVKLSLNESIPCASKDCLPEGLSELMAAGKIGCYALSALGGILFYLKKA
FLDEALLRFAKFELLPCSGSSEFTTKPYMILDAAALENLEVFENSGSGDAKGTLYDQLNR
CVTAFGKRLLKAWLARPLYHIDSIWERQEAVAGVKGVNLPHALEFRKQLSMLPDMERLLA
HIFSCSSEANGRNSSKVVLYEDAAKKQLQEFIMVLSGCELIINACSSLGVIMENSDSRLL
HHLLTPGKGLPDVYAVLRHFKDAFDWMEAKNSGRIIPRDGVDKEYDTACSMVTDIEWSLT
KHLKEQRKLLGDPSINYVTVGKVSYLLEVPESLCGNVPCDYELQSSKKGFSRYWTPAIKN
YIKKLSEAESEKESKFKSIMQRLIGRFCEHHVSWRQLISTAAELDVLISIAIASDLYEGP
TCRPLIVDPSIEDEAPFLAAKNLGHPVLRNDSLGDATFVSNDVCIGGSNHARFILLTGPN
MGGKSTLLRQVCLAVILAQVGADVPAERFKMSPVDRIFVRMGAKDHIMAGQSTFLTELLE
TASMLSSATHNSLVALDELGRGTATSDGQAIAASVLEHLVNKVQCRGLFSTHYHHLALDY
QRIPKVSLCHMACQVGNGVGGLEEVTFLYKLTLGACPKSYGVNVARLAGLPDGVLQKAAT
KSEEFEAMYGKKRKQSKGWEKEVVVIMQSLWNCHCGSSADAIFELQNRAKILLEQK
NT seq
3771 nt
NT seq
+upstream
nt +downstream
nt
atggcattccgtcgcccatccaacggccgatcgcccctcgtcaatccccagcgtcaaatc
acttctttcttctccaaatctccatcatcaacctcctctacttcccctcttctttctaac
tctaaacctaaacctaaacctaaacctacacctaccaccccgtctcctcctctaaccaaa
cgcactaacaaccctcccctgcttcttactcctaaccctattcatggtcatgagctagtt
gatcgaaggattagggtttactggccactggacaagacttggtatgaaggtcgtgtcaca
tcttttcacaagacttcgggtaagcatttggttcagtatgatgatgctgaagaggagctt
ttggatttatccaaagagaagatcgaattactcaacgaccatcccaaaaggttccgcagg
ttgaggcgattttccattcaagaccaagacgatgatgctggaggacctggccaggggaat
gtggataagaatgctgaaagtggaggagatgattctgccgatgaagattggggaatccat
gttgaaaaggaagtgattggtgatgaaacagatgatttagatttggtagacgaggatgag
gaaaatactgtggcagtaaaaccggacctcaagaagcgcaagagctctggaatgaaattg
gattctgctaagaagatcaagaccgaatctttcatggatttaagccgggcaagtttggag
cctataaacaatattaataacaattttgcaagtgggaagacgtctgcttttgttgacaat
gttctagttggtgacaaagctgaaagatttaccactagagaagaagagaaattcaaattt
attgggaaagaccggagggatgccaagaagcgatcccctggagacgaaaattatgaccca
agaactctgtacttgccacctcactttctgaagagtttaacaggtggccagaggcaatgg
tgggagttcaagtcgaaacatatggataaggttctgttttttaagatgggaaagttctat
gagctctttgaaatggacgcccatgttggagcaaaagaacttgatttgcaatatatgaag
ggagaccagcctcattgtggattcccagaaaagaactttgctttgaacgtggggaagttg
gcttgcaagggttaccgtgttctagtcgttgagcagacagagacacctgaccagcttgag
aggcgtaacaaagagcacggttctaaagataaggttgtgaaacgtgaaatatgtgcagta
atcaccaaagggacattgactgatggtgaaatgttgtcagccaatcccgatgcttcttac
ctgtttgcagtttctgaatgctatcaaccatcaggaaagcaacatgatgatagagtctat
ggcgtttgtgttgttgatgttgctacggggaagatcatcattggacagtttgaagatgat
ttggagtgcagtgtgttgagctgtctattgtctcaactaagaccagtggaaatcataaaa
cctattaaattgctcagccctgaaacagaaagagtacttctgagacaaacaagaagtcct
gtcgtaaatgagttggtaccgctcgaagaattttgggatgctgagaaaactatctgcgaa
atcaaggagatttatcagcgaatcagtaatcaatcagttaaattgtctttgaatgaatcc
ataccatgtgctagtaaggattgcctacccgaaggtctctctgagctaatggctgcagga
aaaattggttgctatgctctctcggcccttgggggtattctattttacctgaaaaaggcc
ttcttggacgaggcattgctccgatttgcaaaattcgagctacttccatgttctggatcc
agtgagttcacgacaaaaccatatatgattcttgatgcagctgctttggagaaccttgag
gtttttgagaacagcggaagtggagacgctaaagggacattgtatgatcaactaaaccgt
tgtgtgactgcatttgggaagaggttgcttaaagcatggcttgctagacctttatatcac
atagactcaatctgggaacgccaggaagctgtagctggtgtgaagggagttaatctgcct
catgcacttgaatttcgtaaacagttgtcaatgcttccagacatggagcggttgcttgca
cacatcttttcctgtagcagtgaagctaatggtaggaattcgagtaaagtggttctctat
gaggatgcagcaaagaaacagcttcaggagttcataatggttcttagtggctgtgaatta
attataaatgcatgctcttcactaggtgtcattatggaaaattctgattctaggctgctg
catcacttactaacacctggcaaaggtcttccagatgtttatgcagtccttaggcatttc
aaggatgcttttgattggatggaggcaaaaaattcagggcgtataatccctcgggatggt
gttgataaagaatatgacactgcctgcagtatggttacagatatcgaatggagtctgaca
aagcacttgaaggaacagagaaaactacttggagatccatcaatcaattacgttactgtc
ggaaaggtatcatatctgcttgaagtacctgaaagtctgtgcgggaatgtcccttgtgat
tatgagctacaatcgtccaaaaagggtttctctcgttactggactcctgctattaagaat
tatattaagaagctctcagaagctgaatctgaaaaggagtccaagtttaaaagcatcatg
cagaggttgattgggcgcttctgtgagcatcatgttagctggagacaattgatttctaca
gctgcagaactcgatgtcctcatcagcatagcaattgcaagtgacctctatgaaggacca
acatgtcgtccccttattgtggatccatcaatcgaggatgaagcaccatttcttgctgct
aaaaatttagggcatcctgtgcttcgaaatgattctctgggggatgccacctttgtctca
aatgatgtttgtattggtgggtccaatcatgccagatttatcctgcttactggtcccaac
atgggtgggaagtctactcttctacgtcaagtttgtttagcagtgattttggcccaggtg
ggagcagatgtgccagcagaaaggtttaagatgtctccagttgatcgtatatttgttcgg
atgggtgcgaaggaccatataatggcaggccagagtacatttctaaccgagcttctggaa
actgcatctatgctgtcatcagcaacccataactcacttgtggcattagatgaacttgga
cgagggacggcaacgtcagatggacaagctatagctgcatctgttcttgaacaccttgtc
aataaggtccagtgccgggggttgttctctactcactatcaccacttagctttggactat
cagcgaattcccaaggtttccctgtgtcacatggcatgtcaagttggaaatggagttgga
ggtctagaggaggtaacatttctctacaaattgacacttggtgcatgccccaaaagctat
ggtgtcaacgttgcgcggctagcaggacttcctgatggggtgcttcaaaaggctgcaacc
aagtcggaagagtttgaggcgatgtatggtaagaagagaaaacagtccaagggctgggaa
aaggaggtggtggtgatcatgcagagcttatggaattgtcattgcggttcttcagctgat
gccatatttgaattgcagaatagggcaaagatacttttggagcaaaagtaa
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