KEGG   Cynara cardunculus var. scolymus (artichoke): 112506158
Entry
112506158         CDS       T05604                                 
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
  KO
K10752  histone-binding protein RBBP4
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03082  ATP-dependent chromatin remodeling
ccav03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    112506158
   03083 Polycomb repressive complex
    112506158
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ccav03036]
    112506158
Chromosome and associated proteins [BR:ccav03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     112506158
  Histone modification proteins
   HAT complexes
    HATB complex
     112506158
   HDAC complexes
    Sin3A-HDAC complex
     112506158
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     112506158
    PRC2.2
     112506158
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     112506158
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    112506158
  Chromatin remodeling factors
   NuRD complex
    112506158
   NuRF complex
    112506158
   NuRF complex (fruit fly)
    112506158
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 Beta-prop_EIPR1 WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_EML_2 Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd EIF3I WD40_WDHD1_1st WD40_RFWD3 Beta-prop_EML Beta-prop_IFT122_1st Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_SPT8
Other DBs
NCBI-GeneID: 112506158
NCBI-ProteinID: XP_024965950
LinkDB
Position
LG 2:53097748..53109882
AA seq 300 aa
MSSSIPSEYSADESGYITIRPGRNPSIDKVEDLYEHEETANSETPALSPASTLQGPRVRV
TARKSVALPSLQHARLQGLSSGSFRFIPPPPDSSSIHCRNPILIRSFCGFDKFRPVSPNY
STVRNRFPIVTGKDKSVVLWSIHDHISTLATEPGLTKSPGASGGKNLKTGGDDDKRTESP
VIQARGVFQGHDDTVEDVHFSPSSAQEFCSVGDDSCLILWDARIGSSPAVKVEKAHNADL
HCVDWNSLDENLILTGSADNTVRLFDRRNLTANGVGSPIHIFENHSAAVLCVQVYHFCGC
NT seq 903 nt   +upstreamnt  +downstreamnt
atgtcgtcgtctattcctagtgagtactcggccgatgaatccggctatattaccatccga
cctggaagaaacccgtcaatcgataaagtggaggatttgtatgagcatgaggagactgcg
aatagtgagacccccgcattatcacctgcttcgacacttcaaggtccgagggttagagtc
acagctaggaagagtgttgcactcccaagcctccaacacgctcgattgcaaggtcttagt
tctggctcctttcgattcatacctccacctcccgattcttcttcaattcactgccgtaat
ccgatattgattaggtctttttgtgggtttgataagttcagacccgtctctccaaattat
tcaactgttcgtaatcgatttccgatagttacaggcaaggacaaatcagttgttttgtgg
agtattcatgatcatatctctacattggcaacagaaccagggctaacgaagtctccagga
gctagtggtggtaagaacctgaagactggtggggatgacgataaacgtactgagagccct
gttattcaagcaagaggggtcttccaagggcatgacgataccgttgaagatgtacatttc
agtccctctagcgcacaagaattctgtagtgttggtgatgattcctgtcttatcctatgg
gatgcaagaattggctcttctcctgctgtcaaggttgagaaagcacacaatgctgatctt
cactgtgttgattggaattcacttgatgaaaatctcatattgacagggtcagctgataac
actgttcgcttgtttgatcgtcggaatctcactgccaatggggttggatcaccaatccac
atatttgagaatcatagtgctgctgtcctttgtgtacaggtatatcatttttgtggctgt
tga

DBGET integrated database retrieval system