Cynara cardunculus var. scolymus (artichoke): 112506422
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Entry
112506422 CDS
T05604
Name
(RefSeq) pleiotropic drug resistance protein 3-like
KO
K08711
ATP-binding cassette, subfamily G (WHITE), member 2, PDR
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
112506422
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ccav02000
]
112506422
Transporters [BR:
ccav02000
]
ABC transporters, eukaryotic type
ABCG (White) subfamily
ABCG2, 3 subgroups
112506422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC2_membrane
ABC_tran
PDR_assoc
ABC2_membrane_7
AAA_21
AAA
AAA_25
RsgA_GTPase
Rad17
AAA_16
AAA_30
AAA_23
AAA_18
AAA_29
AAA_22
ABC_trans_N
AAA_28
SMC_N
AAA_15
NACHT
DUF2304
AAA_5
RNA_helicase
RuvB_N
nSTAND3
AAA_19
ORC-CDC6-like
AAA_7
ATPase_2
AAA_11
Motif
Other DBs
NCBI-GeneID:
112506422
NCBI-ProteinID:
XP_024966212
LinkDB
All DBs
Position
LG 2:complement(56101583..56136127)
Genome browser
AA seq
1445 aa
AA seq
DB search
MAQLVGSEEIELLRSELSEIGRSVRSSFRHHTSSLLTNSDISPGNNHDEEVLQWAAIDRL
PTFDRLRSSLFDEENGDGHDVKGKKVVDVTKLLAPERHMFIEKLIKHIENDNLQLLQKLR
KRTDKVGVQLPSVEVRYKNLRVEAECEVVHGKPLPTLWNSLQSMLSDIVMLPGLKSKRAK
ITIINDVSGVIKPGRMTLLLGPPGCGKTSLLKALSGNLNKSLKISGEISYNGYKLEEFVP
QKTATYISQNDLHIPKMTVRETLDFSSRCQGTGSRAEIMVEVNRREKEGGIIPDPDVDTF
MKAISIEGQKTTLQTNYILKILGLDICADTMFGDAMRRGISGGQKKRLTTGEMIVGPTKA
LFMDEISNGLDSSTTYQIIACLQQLAHITDASVLISLLQPSPEAFDLFDDIMLMAEGMIV
YHGSRSNVLEYFEGFGFRCPERKGVADFLQEVVSRKDQAKYWCRTEQAYSYVSVQNLSMK
FKESNLGTEVNEDISKPFTRLPSHENAISCNVYSLSKWSLFRACMSREILLMKRNSFVYI
FKFIQLLIIALITMTVFFRTRLKVDVLDANYYLGSLFYALVILLVDGFPELSMTVARLSV
FYKQRDMYFYPAWAYAIPASILKIPLSMVTAIIWTSLTYYVIGYSPEPERFFRQLVLLFA
MHFTSISMFRFFASLFRTVVASTTAGSISFLFLLSFGGFILPYTSMPAWLKWGFWLSPLS
YGEIGLTLNEFLSPRWNKVMPTNTTIGLQILQSRGLNFDGYYFWISLGALFSFAMLFNIG
FILALSYLKAPGTRAIISKEKLYQVYESEGSKNHTQRDKTTKNSSTDVSKPYEGNMVLPF
EPLTITFQDLQYHVVPPPEMREHGFTGKRLELLSDITGGFRPGVLTALMGVSGAGKTTLL
DVLAGRKTSGIVEGEIKIGGYPKVQETFARISGYCEQTDIHSPQITVEESVIFSAWLRLQ
PEIDSKTKYKFIEEILEIVELYAIKDALVGIPGVSGLSTEQRKRLTIAVEVIANPSIIFM
DEPTTGLDARSAAIVMRAVKNIVDTGRTIVCTIHQPSIDIFEAFDELILLKSGGRMIYCG
PLGRHSSSVIEYLESIPGVPKIRDNYNPATWMLEVTSASMEAELGVDFAKIYSTSALYKS
NKEVVNTLSKPPPGSKELYFPTRFPQNGWGQFKACLWKQRLSYWRSPSYNLMRSLHMLFA
SFIFGLLFWDQGRKIHNQQSLFNILASMYSAVLFCGINNSSSVLPYVSMERTVVYRERFS
GMYASWAYALAQVAIEFPYLFAQSLAFTCITYPMIGYYWSIYKVFWYFYAFLCTLMYFTY
LGMLLVAITPNFPVAAILQSTFYTMFNLFGGFLIPKPKIPGWWIWLYYATPTSWSLNAML
TSQYGDVTKEIVVFGETKRVEAFLRDYFGYHHDELPIAFILLALYPIVLASLFAYCIAKL
NFQRR
NT seq
4338 nt
NT seq
+upstream
nt +downstream
nt
atggcccaactagttggttctgaggaaatagagttactgagaagtgagctgtcagagata
ggaagaagtgtaagatcatcttttcgtcatcatacatctagtttgcttactaattcagat
ataagtcctgggaacaatcatgacgaggaagttctacaatgggctgcaatcgacagattg
ccaacatttgatcgtttgaggtcatctttgtttgatgaagaaaatggagatgggcatgat
gttaaaggaaagaaggtggttgatgtcacaaagctccttgctcctgagcgacacatgttt
attgagaagctcatcaaacacattgagaatgacaaccttcagttgttgcagaaacttaga
aaacgaacagacaaagttggtgtgcaattgccctccgtggaggttagatataagaatctt
cgtgtggaagctgagtgtgaagttgttcatgggaagcccctcccaactctctggaactcc
ttgcaaagcatgctttctgacattgtcatgttacctggtttaaagtctaaacgggctaag
ataaccatcataaacgacgtcagcggtgtcattaagccagggaggatgactctgctcctt
ggtcctccaggatgtgggaaaacctctttgttgaaagcactttcagggaacctaaataaa
tctcttaagattagtggtgaaatttcttacaatggatacaaactagaagaatttgtcccc
cagaaaacagccacctatataagccaaaatgatttgcatatccctaagatgactgtgagg
gaaacacttgatttctcatcccgttgtcagggtactggtagtcgtgcagagattatggtt
gaggttaacaggagggagaaagaaggggggattattccagatccagatgtagacactttt
atgaaggcaatttccattgaaggacaaaagactactcttcagacaaactacatcctgaag
attcttggcctggatatatgtgctgatacaatgtttggagatgccatgaggaggggaatc
tctggtggtcagaagaaaagattgactacaggggagatgattgttggtcccacgaaagct
ttattcatggatgaaatatcaaatggcttagacagctccactacgtatcagataattgct
tgtcttcagcagttggcacatataacagatgcttctgtactcatttcacttcttcagcca
tcaccagaagcatttgatctctttgatgacattatgttgatggctgaagggatgattgtg
tatcatggatctcgcagtaatgttctagagtattttgagggttttggttttaggtgtccc
gagagaaaaggtgtggctgacttcctccaagaggttgtctcaagaaaagatcaagcaaag
tattggtgccgaactgaacaagcatatagttatgtatcagtgcagaacttatccatgaaa
tttaaggaatctaatttgggaacagaagtaaatgaggatatctccaaaccttttactaga
ttgccgagccatgagaatgccatctcctgcaacgtgtattcgctttctaaatggtctctt
tttagagcttgcatgtcaagagagatccttctcatgaagaggaattcttttgtctacatc
ttcaaattcatccagctcctcataattgcattaatcacaatgactgtattctttcgaaca
agattgaaggttgatgtccttgatgcgaattattatctcggttcacttttctatgcactt
gtgattcttctagttgatgggttcccagaattgtctatgacggtggcaagactttcagtt
ttctataaacagcgggacatgtacttctaccctgcttgggcatatgcgattcctgcatcc
attcttaagattccgttgtcaatggtgacagccattatttggacgagtctcacttattat
gttattggatacagccctgaaccagaaaggtttttccgtcagctagtgctattattcgcg
atgcacttcacgtctatatccatgttccggttctttgcatcattgtttcgaactgtggtt
gcttctacaactgcaggcagtatatcatttttgtttctgttgtcatttggtggcttcatt
ttaccatacacttccatgccagcttggttgaagtggggattttggctttctccactgtca
tatggtgaaataggcctcacattgaatgaattcctttctcctagatggaacaaggtgatg
cctacaaacacaaccatagggctacaaatacttcaaagccgtgggttaaactttgatgga
tactatttctggatatcacttggtgccttgttcagttttgcgatgttattcaacataggc
ttcatcttggctttaagctacttgaaggctccaggtactcgagccatcatttcaaaggaa
aagttgtatcaagtatatgaaagtgaaggatccaaaaaccatactcagagggataaaaca
actaaaaattccagtactgatgtctcaaagccttatgaaggaaatatggtgttgcctttt
gaaccgctaacaattacctttcaagatctacagtaccatgtcgtgcccccaccggaaatg
agagagcatgggttcactggaaagagacttgaattacttagcgatatcacagggggtttc
agacctggtgttcttacagcattgatgggtgtaagtggtgctggtaaaacaacacttctt
gacgttcttgctggaaggaaaaccagtggcattgttgaaggagagattaagataggaggg
tatcctaaagtccaagaaacctttgctaggatttcaggttactgtgagcaaactgatata
cactctccccaaattacagttgaagaatcagtgatattttctgcttggctccgtcttcag
cctgaaattgattcaaaaactaaatataagttcattgaagaaattctggaaatagttgag
ctttatgccataaaagatgccttggttggcattcctggggttagtggtctatcaacagag
cagcgtaagcggctcacaattgctgtggaagtcattgctaatccttctatcatattcatg
gatgaacctacaacagggttggatgccagatcagctgccattgtcatgcgggctgtgaag
aatattgtcgatacaggaagaacaattgtctgtaccattcaccaaccaagcattgacata
tttgaggcctttgatgagttaatccttttgaaaagtggtggacgtatgatatactgtgga
ccactgggtcgccattcaagtagtgtcattgaatacctcgagagcatccccggggtgccc
aagattagagacaactataatccagcaacatggatgttagaggttacttcggcatcaatg
gaggctgaacttggagttgattttgcaaaaatatattctacttcggctttgtacaagagc
aataaagaggtagtaaacacattaagtaaaccacctcctggttcaaaagagttgtatttt
ccaacgcgcttcccacaaaatggttggggccagttcaaggcatgcctatggaaacaacgc
ttatcatattggagaagtccttcatacaacttgatgcgttccctgcatatgctctttgca
tcgtttattttcgggttactcttctgggatcaagggaggaaaatacataaccagcagagt
ttatttaatattcttgcttcgatgtactctgctgtactgttctgtggcataaacaactcg
tcttcagtcctaccatatgtttccatggagcgaaccgttgtatatcgagaaagattttct
gggatgtatgcatcatgggcttatgctcttgcacaggtggcaatcgagttcccctatctt
ttcgcccaatcacttgcattcacctgcatcacatatcctatgatcgggtattattggtca
atctacaaggttttctggtatttctatgcattcttgtgcacattgatgtacttcacctat
ttgggcatgctgcttgttgcaatcacaccaaactttcctgtagctgctattctacaatct
acattttacaccatgtttaacttgtttggtggatttttaattcctaaaccgaaaattccg
gggtggtggatatggttgtattatgcaactcctacttcatggtcgcttaacgcaatgctt
acttctcaatatggtgatgtgacgaaggagattgtggtttttggggaaactaaacgtgtc
gaagctttcttaagagattactttgggtatcatcatgatgagttgccgatagcgttcatt
cttcttgcactataccctattgttcttgcttcgctatttgcgtattgtatagccaaactc
aacttccaaagaaggtaa
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