Cynara cardunculus var. scolymus (artichoke): 112506445
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Entry
112506445 CDS
T05604
Name
(RefSeq) WD-40 repeat-containing protein MSI1-like
KO
K10752
histone-binding protein RBBP4
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03082
ATP-dependent chromatin remodeling
ccav03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112506445
03083 Polycomb repressive complex
112506445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccav03036
]
112506445
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
112506445
Histone modification proteins
HAT complexes
HATB complex
112506445
HDAC complexes
Sin3A-HDAC complex
112506445
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
112506445
PRC2.2
112506445
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
112506445
Heterochromatin formation proteins
Other heterochromatin formation proteins
112506445
Chromatin remodeling factors
NuRD complex
112506445
NuRF complex
112506445
NuRF complex (fruit fly)
112506445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_TEP1_2nd
Beta-prop_EML
WD40_RFWD3
MIOS_WD40
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_RIG_1st
eIF2A
WD40_MABP1-WDR62_1st
WD_LRWD1
Beta-prop_WDR19_1st
Beta-prop_HPS5
Glyco_hydro_2
Motif
Other DBs
NCBI-GeneID:
112506445
NCBI-ProteinID:
XP_024966259
LinkDB
All DBs
Position
LG 2:60119357..60136286
Genome browser
AA seq
437 aa
AA seq
DB search
MDHDMDMDMETREDESREQINEETEVEIDESEEAIVERLTNDDYEFWKSTTPFLYNLVAS
HKTEWPSLTVEWLPDRVEPYDRDYLVQSMVLGTHTADNRPNYLMLARVILPLFNDRSNEV
EFGSGSKVEIVQQITHDGEVNRARYMPQNYFIIATKTISSEVHLFDYRNHPYKPHLDGTS
SPDLRLRGHSEEGFGLSWSNFRQGLLLSGSRDANICLWDINGTPKNKALDAMQIYKVNED
VVQDVAWHSRHESLFGSCGDDRNLHIWDIRSPCLSVPVQSFLAHESEMNCLAFNPFNDWI
VATGSIDKTVKLFDLRKFTTTLYTLESHKRGVNQIGWSPHHPEVLASGCDGKRVMVWDLS
RINQRQTPLEAEGGPPELLFIHGGHTDSVVDLSWNPCEDWTIASVANDNMLQIWKLAEHI
YQFVVETNEPPEHAKGG
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggatcacgacatggacatggatatggaaacgagagaggatgaatcaagggagcagatc
aatgaagaaactgaagttgagatagacgagtcagaggaggcgatagttgagaggttgacc
aatgatgactatgaattttggaagagtaccactccgtttttatacaatttggttgcatct
cataaaactgagtggccttcactcactgtcgagtggcttccagatcgggtagaaccatat
gaccgggactacttggtccaaagtatggtcctcggaacccatactgcagataatagacct
aattaccttatgcttgcacgagtgatactccctctatttaatgatcgctcaaatgaagta
gagtttggttcgggcagcaaggtagaaatagtacaacaaatcactcatgatggagaggtg
aacagggctcgttatatgcctcaaaactatttcattattgccaccaagacaatcagttcc
gaagtccatctgtttgattataggaatcatccatataagcctcatcttgatggaacgtcc
agtccagatttgagattgaggggccacagcgaggagggatttggcttatcatggagtaac
ttcagacagggtcttttattgagtggctctcgtgatgccaacatctgcttgtgggacatt
aatgggaccccaaagaataaagctctggatgctatgcaaatatataaggttaatgaagat
gttgtacaagatgtagcatggcattcgaggcatgaatccttatttggttcatgtggcgat
gaccgaaacttgcacatatgggatatccgctctccatgtttgagcgtaccggtccaaagt
tttctggctcatgaaagtgagatgaactgcttagcattcaatccttttaatgattggatt
gtggcaacggggtcaatagacaaaactgtgaagttgtttgatttacgaaaatttaccact
actctctatacccttgagagtcacaagcgtggagtgaatcagattgggtggagtccacat
catccggaagtgttagcttctggttgtgatggtaaaagagtcatggtgtgggatcttagt
aggatcaaccagagacagacaccattagaggcggaaggtgggccaccggagttgctcttt
atccatggtggccatactgattctgttgtggatttgtcatggaacccatgtgaagactgg
accattgccagtgttgcaaatgataatatgctgcaaatctggaagctggctgaacacatc
taccaatttgttgtggaaaccaatgagcctccagagcatgctaaaggtggctaa
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